Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AL691432.2-201ENST00000607222 2038 ntBASIC18.59■□□□□ 0.57
RFX4Q33E94 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFX4Q33E94 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.58■□□□□ 0.57
RFX4Q33E94 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RFX4Q33E94 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RFX4Q33E94 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFX4Q33E94 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RFX4Q33E94 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
RFX4Q33E94 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFX4Q33E94 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RFX4Q33E94 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
RFX4Q33E94 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX4Q33E94 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.58■□□□□ 0.56
RFX4Q33E94 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX4Q33E94 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.58■□□□□ 0.56
RFX4Q33E94 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.58■□□□□ 0.56
RFX4Q33E94 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.58■□□□□ 0.56
RFX4Q33E94 MIR6084-201ENST00000622012 110 ntBASIC18.58■□□□□ 0.56
RFX4Q33E94 RARRES2P11-201ENST00000635158 484 ntBASIC18.58■□□□□ 0.56
RFX4Q33E94 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.58■□□□□ 0.56
RFX4Q33E94 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX4Q33E94 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX4Q33E94 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFX4Q33E94 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
RFX4Q33E94 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.58■□□□□ 0.56
RFX4Q33E94 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
RFX4Q33E94 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX4Q33E94 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.57■□□□□ 0.56
RFX4Q33E94 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RFX4Q33E94 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.57■□□□□ 0.56
RFX4Q33E94 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 AC138907.5-202ENST00000569484 235 ntBASIC18.57■□□□□ 0.56
RFX4Q33E94 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.57■□□□□ 0.56
RFX4Q33E94 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
RFX4Q33E94 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
RFX4Q33E94 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX4Q33E94 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.57■□□□□ 0.56
RFX4Q33E94 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
RFX4Q33E94 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.57■□□□□ 0.56
RFX4Q33E94 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
RFX4Q33E94 KRT16P2-201ENST00000414673 1423 ntBASIC18.57■□□□□ 0.56
RFX4Q33E94 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
RFX4Q33E94 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.56■□□□□ 0.56
RFX4Q33E94 BX119927.1-201ENST00000636596 1552 ntBASIC18.56■□□□□ 0.56
RFX4Q33E94 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX4Q33E94 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX4Q33E94 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RFX4Q33E94 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.56■□□□□ 0.56
RFX4Q33E94 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 AC142381.2-201ENST00000566120 298 ntBASIC18.56■□□□□ 0.56
RFX4Q33E94 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX4Q33E94 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.56■□□□□ 0.56
RFX4Q33E94 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
RFX4Q33E94 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
RFX4Q33E94 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX4Q33E94 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX4Q33E94 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
RFX4Q33E94 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.55■□□□□ 0.56
RFX4Q33E94 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
RFX4Q33E94 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.55■□□□□ 0.56
RFX4Q33E94 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.55■□□□□ 0.56
RFX4Q33E94 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 IRS3P-201ENST00000223076 1006 ntBASIC18.55■□□□□ 0.56
RFX4Q33E94 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.55■□□□□ 0.56
RFX4Q33E94 AC245052.3-201ENST00000450182 901 ntBASIC18.55■□□□□ 0.56
RFX4Q33E94 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.55■□□□□ 0.56
RFX4Q33E94 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
RFX4Q33E94 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
RFX4Q33E94 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX4Q33E94 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms