Protein–RNA interactions for Protein: Q01080

RPA49, DNA-directed RNA polymerase I subunit RPA49, yeastyeast

Predicted RBP Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPA49Q01080 YPL044CYPL044C 549 nt0.98□□□□□ -2.25
RPA49Q01080 YDL196WYDL196W 330 nt0.97□□□□□ -2.25
RPA49Q01080 YDR344CYDR344C 444 nt0.97□□□□□ -2.25
RPA49Q01080 EMT1tM(CAU)D 73 nt0.97□□□□□ -2.25
RPA49Q01080 EMT5tM(CAU)J1 73 nt0.97□□□□□ -2.25
RPA49Q01080 EMT3tM(CAU)J2 73 nt0.97□□□□□ -2.25
RPA49Q01080 EMT4tM(CAU)M 73 nt0.97□□□□□ -2.25
RPA49Q01080 EMT2tM(CAU)O2 73 nt0.97□□□□□ -2.25
RPA49Q01080 CMC4YMR194C-B 222 nt0.97□□□□□ -2.25
RPA49Q01080 KAP120YPL125W 3099 nt0.97□□□□□ -2.25
RPA49Q01080 YER097WYER097W 330 nt0.96□□□□□ -2.26
RPA49Q01080 PAU24YBR301W 363 nt0.96□□□□□ -2.26
RPA49Q01080 BUD3YCL014W 4911 nt0.96□□□□□ -2.26
RPA49Q01080 COG8YML071C 1824 nt0.96□□□□□ -2.26
RPA49Q01080 NOP9YJL010C 2001 nt0.96□□□□□ -2.26
RPA49Q01080 STE5YDR103W 2754 nt0.96□□□□□ -2.26
RPA49Q01080 MCM10YIL150C 1716 nt0.95□□□□□ -2.26
RPA49Q01080 SCC2YDR180W 4482 nt0.95□□□□□ -2.26
RPA49Q01080 INA22YIR024C 651 nt0.95□□□□□ -2.26
RPA49Q01080 SGF11YPL047W 300 nt0.95□□□□□ -2.26
RPA49Q01080 RPL26BYGR034W 384 nt0.92□□□□□ -2.26
RPA49Q01080 PAM16YJL104W 450 nt0.92□□□□□ -2.26
RPA49Q01080 YNL028WYNL028W 318 nt0.92□□□□□ -2.26
RPA49Q01080 YNL211CYNL211C 261 nt0.91□□□□□ -2.26
RPA49Q01080 YIL142C-AYIL142C-A 333 nt0.89□□□□□ -2.27
RPA49Q01080 PMP1YCR024C-A 123 nt0.88□□□□□ -2.27
RPA49Q01080 Q0142Q0142 177 nt0.88□□□□□ -2.27
RPA49Q01080 YMR031W-AYMR031W-A 327 nt0.88□□□□□ -2.27
RPA49Q01080 BFR2YDR299W 1605 nt0.88□□□□□ -2.27
RPA49Q01080 YHR063W-AYHR063W-A 336 nt0.86□□□□□ -2.27
RPA49Q01080 RPS30BYOR182C 192 nt0.86□□□□□ -2.27
RPA49Q01080 DOP1YDR141C 5097 nt0.85□□□□□ -2.27
RPA49Q01080 RKR1YMR247C 4689 nt0.83□□□□□ -2.28
RPA49Q01080 YAL067W-AYAL067W-A 228 nt0.83□□□□□ -2.28
RPA49Q01080 RAD61YDR014W 1944 nt0.82□□□□□ -2.28
RPA49Q01080 YCR018C-AYCR018C-A 255 nt0.82□□□□□ -2.28
RPA49Q01080 YDR354C-AYDR354C-A 144 nt0.82□□□□□ -2.28
RPA49Q01080 YJL197C-AYJL197C-A 282 nt0.82□□□□□ -2.28
RPA49Q01080 NPR2YEL062W 1848 nt0.82□□□□□ -2.28
RPA49Q01080 SEC8YPR055W 3198 nt0.82□□□□□ -2.28
RPA49Q01080 YDL073WYDL073W 2955 nt0.81□□□□□ -2.28
RPA49Q01080 YOR008C-AYOR008C-A 225 nt0.81□□□□□ -2.28
RPA49Q01080 SEC1YDR164C 2175 nt0.79□□□□□ -2.28
RPA49Q01080 YFR012W-AYFR012W-A 87 nt0.79□□□□□ -2.28
RPA49Q01080 YMR307C-AYMR307C-A 195 nt0.79□□□□□ -2.28
RPA49Q01080 YOR072W-BYOR072W-B 162 nt0.79□□□□□ -2.28
RPA49Q01080 YGR069WYGR069W 336 nt0.78□□□□□ -2.28
RPA49Q01080 YNL146WYNL146W 303 nt0.78□□□□□ -2.28
RPA49Q01080 YEL020C-BYEL020C-B 198 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)BtT(AGU)B 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)CtT(AGU)C 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)DtT(AGU)D 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)HtT(AGU)H 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)I1tT(AGU)I1 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)I2tT(AGU)I2 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)JtT(AGU)J 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)N1tT(AGU)N1 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)N2tT(AGU)N2 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)O1tT(AGU)O1 73 nt0.77□□□□□ -2.29
RPA49Q01080 tT(AGU)O2tT(AGU)O2 73 nt0.77□□□□□ -2.29
RPA49Q01080 YLR120W-AYLR120W-A 102 nt0.77□□□□□ -2.29
RPA49Q01080 snR190snR190 190 nt0.77□□□□□ -2.29
RPA49Q01080 snR65snR65 100 nt0.76□□□□□ -2.29
RPA49Q01080 YJL026C-AYJL026C-A 222 nt0.76□□□□□ -2.29
RPA49Q01080 YLR399W-AYLR399W-A 105 nt0.76□□□□□ -2.29
RPA49Q01080 ASE1YOR058C 2658 nt0.76□□□□□ -2.29
RPA49Q01080 PRP16YKR086W 3216 nt0.76□□□□□ -2.29
RPA49Q01080 MYO1YHR023W 5787 nt0.76□□□□□ -2.29
RPA49Q01080 CHS6YJL099W 2241 nt0.75□□□□□ -2.29
RPA49Q01080 COX5BYIL111W 456 nt0.75□□□□□ -2.29
RPA49Q01080 YLL019W-AYLL019W-A 93 nt0.75□□□□□ -2.29
RPA49Q01080 YPR092WYPR092W 306 nt0.75□□□□□ -2.29
RPA49Q01080 YNL277W-AYNL277W-A 189 nt0.74□□□□□ -2.29
RPA49Q01080 YPR160W-AYPR160W-A 81 nt0.74□□□□□ -2.29
RPA49Q01080 YMR160WYMR160W 2451 nt0.74□□□□□ -2.29
RPA49Q01080 YML002WYML002W 2214 nt0.73□□□□□ -2.29
RPA49Q01080 UTP20YBL004W 7482 nt0.73□□□□□ -2.29
RPA49Q01080 YDL185C-AYDL185C-A 228 nt0.73□□□□□ -2.29
RPA49Q01080 YGL052WYGL052W 306 nt0.73□□□□□ -2.29
RPA49Q01080 YOR015WYOR015W 360 nt0.73□□□□□ -2.29
RPA49Q01080 YPR159C-AYPR159C-A 102 nt0.73□□□□□ -2.29
RPA49Q01080 LTE1YAL024C 4308 nt0.72□□□□□ -2.29
RPA49Q01080 YKL100W-AYKL100W-A 90 nt0.72□□□□□ -2.29
RPA49Q01080 YMR172C-AYMR172C-A 384 nt0.72□□□□□ -2.29
RPA49Q01080 YLR282CYLR282C 342 nt0.71□□□□□ -2.3
RPA49Q01080 COY1YKL179C 2040 nt0.71□□□□□ -2.3
RPA49Q01080 FYV10YIL097W 1551 nt0.7□□□□□ -2.3
RPA49Q01080 BLI1YKL061W 342 nt0.69□□□□□ -2.3
RPA49Q01080 YGL123C-AYGL123C-A 231 nt0.68□□□□□ -2.3
RPA49Q01080 YJL127W-AYJL127W-A 117 nt0.66□□□□□ -2.3
RPA49Q01080 HAL9YOL089C 3093 nt0.66□□□□□ -2.3
RPA49Q01080 YPR010C-AYPR010C-A 219 nt0.65□□□□□ -2.31
RPA49Q01080 PRP5YBR237W 2550 nt0.65□□□□□ -2.31
RPA49Q01080 PRP42YDR235W 1635 nt0.64□□□□□ -2.31
RPA49Q01080 tF(GAA)BtF(GAA)B 73 nt0.64□□□□□ -2.31
RPA49Q01080 tF(GAA)FtF(GAA)F 73 nt0.64□□□□□ -2.31
RPA49Q01080 tF(GAA)GtF(GAA)G 73 nt0.64□□□□□ -2.31
RPA49Q01080 tF(GAA)H1tF(GAA)H1 73 nt0.64□□□□□ -2.31
RPA49Q01080 tF(GAA)H2tF(GAA)H2 73 nt0.64□□□□□ -2.31
RPA49Q01080 tF(GAA)MtF(GAA)M 73 nt0.64□□□□□ -2.31
Retrieved 100 of 7,029 protein–RNA pairs in 30.1 ms