Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 YLR035C-AYLR035C-A 3468 nt1.85□□□□□ -2.11
SSL2Q00578 PKH2YOL100W 3246 nt1.85□□□□□ -2.11
SSL2Q00578 PAA1YDR071C 576 nt1.84□□□□□ -2.11
SSL2Q00578 YIL071W-AYIL071W-A 477 nt1.84□□□□□ -2.11
SSL2Q00578 YOR314W-AYOR314W-A 111 nt1.84□□□□□ -2.11
SSL2Q00578 SBE22YHR103W 2559 nt1.84□□□□□ -2.12
SSL2Q00578 CFT1YDR301W 4074 nt1.84□□□□□ -2.12
SSL2Q00578 YMR045CYMR045C 5268 nt1.83□□□□□ -2.12
SSL2Q00578 YFR012W-AYFR012W-A 87 nt1.83□□□□□ -2.12
SSL2Q00578 CTF4YPR135W 2784 nt1.83□□□□□ -2.12
SSL2Q00578 UTP21YLR409C 2820 nt1.83□□□□□ -2.12
SSL2Q00578 SLI15YBR156C 2097 nt1.82□□□□□ -2.12
SSL2Q00578 SAC3YDR159W 3906 nt1.82□□□□□ -2.12
SSL2Q00578 tL(UAA)QtL(UAA)Q 85 nt1.82□□□□□ -2.12
SSL2Q00578 TBS1YBR150C 3285 nt1.82□□□□□ -2.12
SSL2Q00578 YLR422WYLR422W 5799 nt1.81□□□□□ -2.12
SSL2Q00578 YOR093CYOR093C 4947 nt1.8□□□□□ -2.12
SSL2Q00578 COA6YMR244C-A 315 nt1.8□□□□□ -2.12
SSL2Q00578 PKH3YDR466W 2697 nt1.8□□□□□ -2.12
SSL2Q00578 TDA9YML081W 3756 nt1.8□□□□□ -2.12
SSL2Q00578 TTI1YKL033W 3117 nt1.78□□□□□ -2.12
SSL2Q00578 IRC20YLR247C 4671 nt1.77□□□□□ -2.13
SSL2Q00578 YIL002W-AYIL002W-A 210 nt1.77□□□□□ -2.13
SSL2Q00578 SPO24YPR036W-A 204 nt1.77□□□□□ -2.13
SSL2Q00578 tQ(UUG)E2tQ(UUG)E2 72 nt1.76□□□□□ -2.13
SSL2Q00578 SFB2YNL049C 2631 nt1.76□□□□□ -2.13
SSL2Q00578 APL1YJR005W 2103 nt1.75□□□□□ -2.13
SSL2Q00578 ADR1YDR216W 3972 nt1.75□□□□□ -2.13
SSL2Q00578 SKI3YPR189W 4299 nt1.75□□□□□ -2.13
SSL2Q00578 DNF3YMR162C 4971 nt1.75□□□□□ -2.13
SSL2Q00578 YLL054CYLL054C 2532 nt1.75□□□□□ -2.13
SSL2Q00578 PRP5YBR237W 2550 nt1.74□□□□□ -2.13
SSL2Q00578 NUT1YGL151W 3399 nt1.74□□□□□ -2.13
SSL2Q00578 YOR019WYOR019W 2193 nt1.74□□□□□ -2.13
SSL2Q00578 MYO2YOR326W 4725 nt1.74□□□□□ -2.13
SSL2Q00578 YDR544CYDR544C 429 nt1.74□□□□□ -2.13
SSL2Q00578 YDL206WYDL206W 2289 nt1.74□□□□□ -2.13
SSL2Q00578 POL5YEL055C 3069 nt1.74□□□□□ -2.13
SSL2Q00578 IRA1YBR140C 9279 nt1.72□□□□□ -2.13
SSL2Q00578 TFB5YDR079C-A 219 nt1.72□□□□□ -2.13
SSL2Q00578 YAL067W-AYAL067W-A 228 nt1.72□□□□□ -2.13
SSL2Q00578 MEC1YBR136W 7107 nt1.72□□□□□ -2.13
SSL2Q00578 NUP157YER105C 4176 nt1.71□□□□□ -2.14
SSL2Q00578 YNL103W-AYNL103W-A 90 nt1.7□□□□□ -2.14
SSL2Q00578 YNL211CYNL211C 261 nt1.7□□□□□ -2.14
SSL2Q00578 YBR099CYBR099C 384 nt1.7□□□□□ -2.14
SSL2Q00578 UFD2YDL190C 2886 nt1.7□□□□□ -2.14
SSL2Q00578 TRM3YDL112W 4311 nt1.7□□□□□ -2.14
SSL2Q00578 OST4YDL232W 111 nt1.69□□□□□ -2.14
SSL2Q00578 ALY2YJL084C 3141 nt1.68□□□□□ -2.14
SSL2Q00578 YCR095W-AYCR095W-A 159 nt1.68□□□□□ -2.14
SSL2Q00578 PMP2YEL017C-A 132 nt1.68□□□□□ -2.14
SSL2Q00578 RAD50YNL250W 3939 nt1.68□□□□□ -2.14
SSL2Q00578 STB6YKL072W 2301 nt1.67□□□□□ -2.14
SSL2Q00578 KCS1YDR017C 3153 nt1.67□□□□□ -2.14
SSL2Q00578 YGL182CYGL182C 324 nt1.67□□□□□ -2.14
SSL2Q00578 BRR2YER172C 6492 nt1.67□□□□□ -2.14
SSL2Q00578 PET127YOR017W 2403 nt1.66□□□□□ -2.14
SSL2Q00578 YGL123C-AYGL123C-A 231 nt1.66□□□□□ -2.14
SSL2Q00578 EMC5YIL027C 426 nt1.66□□□□□ -2.14
SSL2Q00578 CMC4YMR194C-B 222 nt1.66□□□□□ -2.14
SSL2Q00578 YMR326CYMR326C 309 nt1.66□□□□□ -2.14
SSL2Q00578 YOR161W-AYOR161W-A 81 nt1.66□□□□□ -2.14
SSL2Q00578 snR14snR14 160 nt1.66□□□□□ -2.14
SSL2Q00578 SXM1YDR395W 2835 nt1.66□□□□□ -2.14
SSL2Q00578 VPS15YBR097W 4365 nt1.66□□□□□ -2.14
SSL2Q00578 MON2YNL297C 4911 nt1.65□□□□□ -2.14
SSL2Q00578 CHS6YJL099W 2241 nt1.65□□□□□ -2.15
SSL2Q00578 PIK1YNL267W 3201 nt1.65□□□□□ -2.15
SSL2Q00578 BFR2YDR299W 1605 nt1.65□□□□□ -2.15
SSL2Q00578 EAF1YDR359C 2949 nt1.64□□□□□ -2.15
SSL2Q00578 BST1YFL025C 3090 nt1.64□□□□□ -2.15
SSL2Q00578 PAN2YGL094C 3348 nt1.64□□□□□ -2.15
SSL2Q00578 PMD1YER132C 5262 nt1.63□□□□□ -2.15
SSL2Q00578 YLR282CYLR282C 342 nt1.63□□□□□ -2.15
SSL2Q00578 SLX4YLR135W 2247 nt1.62□□□□□ -2.15
SSL2Q00578 YBL039C-AYBL039C-A 84 nt1.62□□□□□ -2.15
SSL2Q00578 SMC4YLR086W 4257 nt1.62□□□□□ -2.15
SSL2Q00578 YAR009CYAR009C 3591 nt1.62□□□□□ -2.15
SSL2Q00578 YHR217CYHR217C 462 nt1.61□□□□□ -2.15
SSL2Q00578 YLL020CYLL020C 306 nt1.61□□□□□ -2.15
SSL2Q00578 MMS4YBR098W 2076 nt1.6□□□□□ -2.15
SSL2Q00578 COX5BYIL111W 456 nt1.59□□□□□ -2.15
SSL2Q00578 snR39BsnR39B 96 nt1.59□□□□□ -2.15
SSL2Q00578 KIP1YBL063W 3336 nt1.59□□□□□ -2.16
SSL2Q00578 RSM22YKL155C 1887 nt1.58□□□□□ -2.16
SSL2Q00578 SPC110YDR356W 2835 nt1.58□□□□□ -2.16
SSL2Q00578 FYV8YGR196C 2454 nt1.58□□□□□ -2.16
SSL2Q00578 KAP122YGL016W 3246 nt1.58□□□□□ -2.16
SSL2Q00578 snR61snR61 90 nt1.58□□□□□ -2.16
SSL2Q00578 SOM1YEL059C-A 225 nt1.58□□□□□ -2.16
SSL2Q00578 UTP8YGR128C 2142 nt1.58□□□□□ -2.16
SSL2Q00578 TRM732YMR259C 4263 nt1.58□□□□□ -2.16
SSL2Q00578 YNL067W-BYNL067W-B 141 nt1.57□□□□□ -2.16
SSL2Q00578 TAH1YCR060W 336 nt1.56□□□□□ -2.16
SSL2Q00578 QCR9YGR183C 201 nt1.56□□□□□ -2.16
SSL2Q00578 YHR131W-AYHR131W-A 246 nt1.55□□□□□ -2.16
SSL2Q00578 CCH1YGR217W 6120 nt1.54□□□□□ -2.16
SSL2Q00578 YKL100W-AYKL100W-A 90 nt1.54□□□□□ -2.16
SSL2Q00578 CAT8YMR280C 4302 nt1.54□□□□□ -2.16
Retrieved 100 of 7,029 protein–RNA pairs in 12.5 ms