Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.03■□□□□ 0.64
RAE1P78406 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
RAE1P78406 MIR663A-201ENST00000385250 93 ntBASIC19.03■□□□□ 0.64
RAE1P78406 AC026185.1-201ENST00000445748 174 ntBASIC19.03■□□□□ 0.64
RAE1P78406 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.03■□□□□ 0.64
RAE1P78406 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.03■□□□□ 0.64
RAE1P78406 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.03■□□□□ 0.64
RAE1P78406 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
RAE1P78406 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.03■□□□□ 0.64
RAE1P78406 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
RAE1P78406 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RAE1P78406 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.03■□□□□ 0.64
RAE1P78406 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
RAE1P78406 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 KRT8P20-201ENST00000423953 1409 ntBASIC19.02■□□□□ 0.64
RAE1P78406 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.02■□□□□ 0.64
RAE1P78406 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.02■□□□□ 0.64
RAE1P78406 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 AC105036.2-201ENST00000569468 176 ntBASIC19.02■□□□□ 0.64
RAE1P78406 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RAE1P78406 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
RAE1P78406 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
RAE1P78406 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
RAE1P78406 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.01■□□□□ 0.63
RAE1P78406 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAE1P78406 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.01■□□□□ 0.63
RAE1P78406 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
RAE1P78406 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAE1P78406 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.01■□□□□ 0.63
RAE1P78406 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.01■□□□□ 0.63
RAE1P78406 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RAE1P78406 AF201337.1-201ENST00000520239 748 ntBASIC19.01■□□□□ 0.63
RAE1P78406 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.01■□□□□ 0.63
RAE1P78406 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.01■□□□□ 0.63
RAE1P78406 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.01■□□□□ 0.63
RAE1P78406 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.01■□□□□ 0.63
RAE1P78406 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAE1P78406 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RAE1P78406 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RAE1P78406 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
RAE1P78406 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RAE1P78406 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19■□□□□ 0.63
RAE1P78406 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19■□□□□ 0.63
RAE1P78406 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19■□□□□ 0.63
RAE1P78406 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19■□□□□ 0.63
RAE1P78406 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19■□□□□ 0.63
RAE1P78406 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19■□□□□ 0.63
RAE1P78406 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 MKRN4P-201ENST00000444706 1521 ntBASIC19■□□□□ 0.63
RAE1P78406 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RAE1P78406 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.99■□□□□ 0.63
RAE1P78406 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.99■□□□□ 0.63
RAE1P78406 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.99■□□□□ 0.63
RAE1P78406 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.99■□□□□ 0.63
RAE1P78406 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.99■□□□□ 0.63
RAE1P78406 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.99■□□□□ 0.63
RAE1P78406 LSM12P1-201ENST00000411836 588 ntBASIC18.99■□□□□ 0.63
RAE1P78406 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.99■□□□□ 0.63
RAE1P78406 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.99■□□□□ 0.63
RAE1P78406 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.99■□□□□ 0.63
RAE1P78406 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RAE1P78406 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.99■□□□□ 0.63
RAE1P78406 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms