Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CLRN1P58418 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CLRN1P58418 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN1P58418 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLRN1P58418 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.89■□□□□ 0.46
CLRN1P58418 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLRN1P58418 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLRN1P58418 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.89■□□□□ 0.45
CLRN1P58418 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CLRN1P58418 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 AC006970.2-201ENST00000450065 779 ntBASIC17.89■□□□□ 0.45
CLRN1P58418 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.89■□□□□ 0.45
CLRN1P58418 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.89■□□□□ 0.45
CLRN1P58418 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 SLC25A24-204ENST00000569674 2357 ntBASIC17.89■□□□□ 0.45
CLRN1P58418 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.45
CLRN1P58418 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.89■□□□□ 0.45
CLRN1P58418 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
CLRN1P58418 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLRN1P58418 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.89■□□□□ 0.45
CLRN1P58418 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.88■□□□□ 0.45
CLRN1P58418 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 MKRN4P-201ENST00000444706 1521 ntBASIC17.88■□□□□ 0.45
CLRN1P58418 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CLRN1P58418 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 LSM12P1-201ENST00000411836 588 ntBASIC17.88■□□□□ 0.45
CLRN1P58418 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.88■□□□□ 0.45
CLRN1P58418 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.88■□□□□ 0.45
CLRN1P58418 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.88■□□□□ 0.45
CLRN1P58418 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN1P58418 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.88■□□□□ 0.45
CLRN1P58418 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.88■□□□□ 0.45
CLRN1P58418 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CLRN1P58418 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.87■□□□□ 0.45
CLRN1P58418 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
CLRN1P58418 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.87■□□□□ 0.45
CLRN1P58418 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.87■□□□□ 0.45
CLRN1P58418 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.87■□□□□ 0.45
CLRN1P58418 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.87■□□□□ 0.45
CLRN1P58418 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLRN1P58418 AL050303.2-201ENST00000619798 666 ntBASIC17.87■□□□□ 0.45
CLRN1P58418 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN1P58418 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CLRN1P58418 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CLRN1P58418 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 CROCCP5-201ENST00000436658 830 ntBASIC17.86■□□□□ 0.45
CLRN1P58418 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CLRN1P58418 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.86■□□□□ 0.45
CLRN1P58418 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.86■□□□□ 0.45
CLRN1P58418 RAP2CP1-201ENST00000605103 478 ntBASIC17.86■□□□□ 0.45
CLRN1P58418 AC092666.2-201ENST00000613287 246 ntBASIC17.86■□□□□ 0.45
CLRN1P58418 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 KRT17P1-201ENST00000399211 1546 ntBASIC17.86■□□□□ 0.45
CLRN1P58418 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN1P58418 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CLRN1P58418 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.86■□□□□ 0.45
CLRN1P58418 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms