Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RAP2CP1-201ENST00000605103 478 ntBASIC18.78■□□□□ 0.6
RFX3P48380 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.78■□□□□ 0.6
RFX3P48380 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RFX3P48380 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 AL512408.1-201ENST00000569378 2000 ntBASIC18.78■□□□□ 0.6
RFX3P48380 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX3P48380 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RFX3P48380 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.77■□□□□ 0.6
RFX3P48380 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.77■□□□□ 0.6
RFX3P48380 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.77■□□□□ 0.6
RFX3P48380 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RFX3P48380 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.77■□□□□ 0.6
RFX3P48380 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
RFX3P48380 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFX3P48380 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
RFX3P48380 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFX3P48380 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFX3P48380 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.59
RFX3P48380 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.77■□□□□ 0.59
RFX3P48380 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFX3P48380 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFX3P48380 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFX3P48380 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFX3P48380 AC112907.3-201ENST00000577781 2400 ntBASIC18.76■□□□□ 0.59
RFX3P48380 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RFX3P48380 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 DPP3P2-201ENST00000416030 1696 ntBASIC18.76■□□□□ 0.59
RFX3P48380 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 MKRN4P-201ENST00000444706 1521 ntBASIC18.76■□□□□ 0.59
RFX3P48380 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 KRT18P68-201ENST00000392293 1000 ntBASIC18.76■□□□□ 0.59
RFX3P48380 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.76■□□□□ 0.59
RFX3P48380 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.76■□□□□ 0.59
RFX3P48380 CYP2T3P-201ENST00000601990 817 ntBASIC18.76■□□□□ 0.59
RFX3P48380 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RFX3P48380 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.76■□□□□ 0.59
RFX3P48380 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX3P48380 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.75■□□□□ 0.59
RFX3P48380 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RFX3P48380 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RFX3P48380 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.75■□□□□ 0.59
RFX3P48380 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.75■□□□□ 0.59
RFX3P48380 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.75■□□□□ 0.59
RFX3P48380 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
RFX3P48380 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.75■□□□□ 0.59
RFX3P48380 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RFX3P48380 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
RFX3P48380 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
RFX3P48380 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.74■□□□□ 0.59
RFX3P48380 AC090192.1-201ENST00000517740 490 ntBASIC18.74■□□□□ 0.59
RFX3P48380 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.74■□□□□ 0.59
RFX3P48380 AC100791.3-201ENST00000617619 330 ntBASIC18.74■□□□□ 0.59
RFX3P48380 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RFX3P48380 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms