Protein–RNA interactions for Protein: P18031

PTPN1, Tyrosine-protein phosphatase non-receptor type 1, humanhuman

Known RBP Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1P18031 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN1P18031 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN1P18031 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN1P18031 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
PTPN1P18031 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.22■□□□□ 0.99
PTPN1P18031 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.22■□□□□ 0.99
PTPN1P18031 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.22■□□□□ 0.99
PTPN1P18031 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PTPN1P18031 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 AC098590.1-201ENST00000468126 897 ntBASIC21.22■□□□□ 0.99
PTPN1P18031 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.22■□□□□ 0.99
PTPN1P18031 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.22■□□□□ 0.99
PTPN1P18031 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.22■□□□□ 0.99
PTPN1P18031 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.22■□□□□ 0.99
PTPN1P18031 RN7SL471P-201ENST00000580476 299 ntBASIC21.22■□□□□ 0.99
PTPN1P18031 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN1P18031 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.22■□□□□ 0.99
PTPN1P18031 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN1P18031 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.21■□□□□ 0.99
PTPN1P18031 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN1P18031 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN1P18031 AC124283.5-201ENST00000624661 1809 ntBASIC21.21■□□□□ 0.99
PTPN1P18031 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN1P18031 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PTPN1P18031 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN1P18031 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN1P18031 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.21■□□□□ 0.99
PTPN1P18031 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.21■□□□□ 0.99
PTPN1P18031 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
PTPN1P18031 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
PTPN1P18031 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
PTPN1P18031 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN1P18031 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN1P18031 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN1P18031 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN1P18031 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PTPN1P18031 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN1P18031 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
PTPN1P18031 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.2■□□□□ 0.98
PTPN1P18031 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.2■□□□□ 0.98
PTPN1P18031 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN1P18031 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN1P18031 MTDHP1-201ENST00000605323 784 ntBASIC21.2■□□□□ 0.98
PTPN1P18031 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN1P18031 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN1P18031 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PTPN1P18031 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN1P18031 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN1P18031 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.19■□□□□ 0.98
PTPN1P18031 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN1P18031 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PTPN1P18031 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PTPN1P18031 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN1P18031 GCSHP5-201ENST00000443090 522 ntBASIC21.19■□□□□ 0.98
PTPN1P18031 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.19■□□□□ 0.98
PTPN1P18031 AC142381.4-202ENST00000563973 229 ntBASIC21.19■□□□□ 0.98
PTPN1P18031 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
PTPN1P18031 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN1P18031 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
PTPN1P18031 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN1P18031 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.19■□□□□ 0.98
PTPN1P18031 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PTPN1P18031 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN1P18031 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN1P18031 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.18■□□□□ 0.98
PTPN1P18031 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN1P18031 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PTPN1P18031 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN1P18031 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN1P18031 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN1P18031 GABARAPL3-202ENST00000624044 1851 ntBASIC21.18■□□□□ 0.98
PTPN1P18031 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN1P18031 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN1P18031 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
PTPN1P18031 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PTPN1P18031 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms