Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.64■□□□□ 0.73
SDC3O75056 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.64■□□□□ 0.73
SDC3O75056 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.64■□□□□ 0.73
SDC3O75056 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
SDC3O75056 AC010331.1-201ENST00000611423 582 ntBASIC19.64■□□□□ 0.73
SDC3O75056 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.64■□□□□ 0.73
SDC3O75056 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.64■□□□□ 0.73
SDC3O75056 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC3O75056 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
SDC3O75056 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.63■□□□□ 0.73
SDC3O75056 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.63■□□□□ 0.73
SDC3O75056 KRT16P5-201ENST00000455284 522 ntBASIC19.63■□□□□ 0.73
SDC3O75056 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.63■□□□□ 0.73
SDC3O75056 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.63■□□□□ 0.73
SDC3O75056 AP003071.4-201ENST00000562276 1284 ntBASIC19.63■□□□□ 0.73
SDC3O75056 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.63■□□□□ 0.73
SDC3O75056 AL121906.2-201ENST00000621597 723 ntBASIC19.63■□□□□ 0.73
SDC3O75056 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SDC3O75056 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.63■□□□□ 0.73
SDC3O75056 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC3O75056 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC3O75056 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC3O75056 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SDC3O75056 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC3O75056 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SDC3O75056 FAM197Y1-201ENST00000421178 764 ntBASIC19.62■□□□□ 0.73
SDC3O75056 AL355355.2-201ENST00000442321 338 ntBASIC19.62■□□□□ 0.73
SDC3O75056 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SDC3O75056 CD177P1-201ENST00000606252 935 ntBASIC19.62■□□□□ 0.73
SDC3O75056 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
SDC3O75056 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SDC3O75056 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SDC3O75056 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SDC3O75056 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.61■□□□□ 0.73
SDC3O75056 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.61■□□□□ 0.73
SDC3O75056 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.61■□□□□ 0.73
SDC3O75056 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SDC3O75056 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SDC3O75056 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.61■□□□□ 0.73
SDC3O75056 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.61■□□□□ 0.73
SDC3O75056 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDC3O75056 AF106564.1-201ENST00000607058 2553 ntBASIC19.61■□□□□ 0.73
SDC3O75056 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.61■□□□□ 0.73
SDC3O75056 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SDC3O75056 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SDC3O75056 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.6■□□□□ 0.73
SDC3O75056 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.6■□□□□ 0.73
SDC3O75056 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.6■□□□□ 0.73
SDC3O75056 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.6■□□□□ 0.73
SDC3O75056 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.6■□□□□ 0.73
SDC3O75056 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.6■□□□□ 0.73
SDC3O75056 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.6■□□□□ 0.73
SDC3O75056 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC3O75056 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms