Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TMX2-CTNND1H3BSU7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TMX2-CTNND1H3BSU7 AC087633.2-202ENST00000565166 1439 ntBASIC19.65■□□□□ 0.74
TMX2-CTNND1H3BSU7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
TMX2-CTNND1H3BSU7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TMX2-CTNND1H3BSU7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
TMX2-CTNND1H3BSU7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
TMX2-CTNND1H3BSU7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 PCDHAC2-203ENST00000615316 3011 ntBASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TMX2-CTNND1H3BSU7 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 AP001412.1-201ENST00000608405 714 ntBASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.63■□□□□ 0.73
TMX2-CTNND1H3BSU7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TMX2-CTNND1H3BSU7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 Z99916.2-201ENST00000604037 246 ntBASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 AC073912.3-201ENST00000624414 853 ntBASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TMX2-CTNND1H3BSU7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 AL135905.2-201ENST00000584934 1404 ntBASIC19.6■□□□□ 0.73
TMX2-CTNND1H3BSU7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms