Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A6A6NMZ7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL6A6A6NMZ7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
COL6A6A6NMZ7 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 AC011558.1-201ENST00000623459 338 ntBASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 B3GAT3P1-201ENST00000471720 806 ntBASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 COX11P1-201ENST00000489116 835 ntBASIC18.14■□□□□ 0.49
COL6A6A6NMZ7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 AC080038.3-201ENST00000623346 1952 ntBASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 KRT8P45-201ENST00000414328 1447 ntBASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 IER3-202ENST00000376377 1350 ntBASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 INGX-201ENST00000359239 846 ntBASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL6A6A6NMZ7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 AC023632.3-201ENST00000521633 145 ntBASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 C9orf163-202ENST00000624034 2573 ntBASIC18.12■□□□□ 0.49
COL6A6A6NMZ7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 TSPY21P-201ENST00000433481 731 ntBASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 TSPY23P-201ENST00000440136 739 ntBASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 CR769767.2-201ENST00000622735 460 ntBASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms