Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU1-28P-201ENST00000383861 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNU1-27P-201ENST00000383869 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNU1-1-201ENST00000383925 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNVU1-18-201ENST00000384010 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNU1-2-201ENST00000384278 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNU6-1005P-201ENST00000384519 107 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNU1-4-201ENST00000384659 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNU1-3-201ENST00000384782 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 CAV1-204ENST00000393470 598 ntTSL 4 BASIC8.12□□□□□ -1.11
MSX1P28360 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 MTRF1-204ENST00000430347 557 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 SLC25A24P1-202ENST00000434803 1220 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AL355149.1-201ENST00000438396 882 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 SEPT14P24-201ENST00000447236 180 ntBASIC8.12□□□□□ -1.11
MSX1P28360 ARAFP3-201ENST00000454154 490 ntBASIC8.12□□□□□ -1.11
MSX1P28360 CCNB1IP1P3-201ENST00000454702 829 ntBASIC8.12□□□□□ -1.11
MSX1P28360 OR2AF1P-201ENST00000454899 889 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC8.12□□□□□ -1.11
MSX1P28360 SOX2-OT-202ENST00000461063 566 ntTSL 3 BASIC8.12□□□□□ -1.11
MSX1P28360 AF186996.8-201ENST00000463158 907 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RPL12P8-201ENST00000482081 580 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AC021006.1-201ENST00000489849 553 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC8.12□□□□□ -1.11
MSX1P28360 AC027343.3-201ENST00000504494 564 ntTSL 4 BASIC8.12□□□□□ -1.11
MSX1P28360 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 RN7SKP5-201ENST00000517045 272 ntBASIC8.12□□□□□ -1.11
MSX1P28360 HIGD1AP18-201ENST00000520730 278 ntBASIC8.12□□□□□ -1.11
MSX1P28360 IGKV3-25-201ENST00000523155 253 ntBASIC8.12□□□□□ -1.11
MSX1P28360 DEFB130C-202ENST00000530001 230 ntBASIC8.12□□□□□ -1.11
MSX1P28360 LINC02373-201ENST00000549261 423 ntTSL 3 BASIC8.12□□□□□ -1.11
MSX1P28360 AL137230.2-201ENST00000555070 452 ntTSL 3 BASIC8.12□□□□□ -1.11
MSX1P28360 ISCA1P3-201ENST00000577104 373 ntBASIC8.12□□□□□ -1.11
MSX1P28360 MIR4999-201ENST00000585029 91 ntBASIC8.12□□□□□ -1.11
MSX1P28360 LINC00854-204ENST00000594691 649 ntAPPRIS P5 TSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 AC005034.2-201ENST00000604464 414 ntBASIC8.12□□□□□ -1.11
MSX1P28360 U1.40-201ENST00000610976 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AC063943.3-201ENST00000615562 356 ntBASIC8.12□□□□□ -1.11
MSX1P28360 U1.27-201ENST00000615842 164 ntBASIC8.12□□□□□ -1.11
MSX1P28360 CDK2AP2P1-201ENST00000617479 328 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AC072046.2-201ENST00000618366 268 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AC019080.5-201ENST00000624891 757 ntBASIC8.12□□□□□ -1.11
MSX1P28360 CPSF7-226ENST00000626926 306 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 AC099654.12-201ENST00000639868 649 ntBASIC8.12□□□□□ -1.11
MSX1P28360 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 SLC25A13-201ENST00000265631 3136 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 USP2-AS1-201ENST00000498979 2486 ntTSL 3 BASIC8.12□□□□□ -1.11
MSX1P28360 DIAPH3-203ENST00000400319 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 SFR1-202ENST00000369729 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 AC092652.3-201ENST00000473426 1517 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 CHODL-206ENST00000400135 2136 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 LRRC37A11P-201ENST00000425901 3580 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 BUB1-212ENST00000535254 3576 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 PPARGC1A-206ENST00000507380 2385 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 POLR2D-203ENST00000409955 1758 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 RPLP0P2-206ENST00000496593 3525 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 KIF2B-201ENST00000268919 2313 ntAPPRIS P1 BASIC8.12□□□□□ -1.11
MSX1P28360 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 ASCC1-202ENST00000317168 2002 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 PPM1A-201ENST00000325642 1713 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 WDR92-202ENST00000406245 1401 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 TBXAS1-209ENST00000455353 1435 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 AL049840.1-201ENST00000498989 1404 ntTSL 4 BASIC8.12□□□□□ -1.11
MSX1P28360 RPGR-201ENST00000318842 3108 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 HTR2A-201ENST00000378688 4835 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 PTK2B-201ENST00000346049 4147 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 MFSD8-256ENST00000641949 1640 ntBASIC8.11□□□□□ -1.11
MSX1P28360 RNF145-211ENST00000521606 2658 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 CTNNA2-201ENST00000343114 2927 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 AL109810.2-201ENST00000425559 1348 ntAPPRIS P1 TSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 SORL1-211ENST00000532694 3692 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 OR10J5-201ENST00000334857 930 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
MSX1P28360 LAIR2-202ENST00000351841 538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 MAS1L-201ENST00000377127 1260 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
MSX1P28360 ZDHHC11B-201ENST00000382776 1116 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 TRBV27-201ENST00000390399 387 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
MSX1P28360 BTF3P7-201ENST00000407097 488 ntBASIC8.11□□□□□ -1.11
MSX1P28360 RNU6-920P-201ENST00000410926 92 ntBASIC8.11□□□□□ -1.11
MSX1P28360 RN7SKP161-201ENST00000411110 305 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC245052.5-201ENST00000416320 649 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 OSBPL10-AS1-201ENST00000417313 475 ntTSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 UBE2V1P8-201ENST00000437166 265 ntBASIC8.11□□□□□ -1.11
MSX1P28360 ASH2LP1-201ENST00000438037 985 ntBASIC8.11□□□□□ -1.11
MSX1P28360 SMYD1-202ENST00000438570 680 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 AC145625.1-201ENST00000441444 592 ntTSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 AC022400.2-201ENST00000446730 866 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 HNRNPA1P31-201ENST00000448627 970 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 AC104619.1-201ENST00000459634 631 ntBASIC8.11□□□□□ -1.11
MSX1P28360 RN7SL263P-201ENST00000467969 290 ntBASIC8.11□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms