Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RAE1-202ENST00000395840 2602 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 AC016716.1-201ENST00000265882 708 ntBASIC8.15□□□□□ -1.1
MSX1P28360 TFF1-201ENST00000291527 551 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 RN7SKP93-201ENST00000363838 309 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 MIR296-201ENST00000385215 80 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AL139806.1-201ENST00000403057 1002 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AL096711.1-201ENST00000404780 554 ntBASIC8.15□□□□□ -1.1
MSX1P28360 RNA5SP209-201ENST00000411237 97 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AL136981.1-201ENST00000411450 549 ntTSL 4 BASIC8.15□□□□□ -1.1
MSX1P28360 SEM1-203ENST00000413065 661 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 HCG18-234ENST00000413358 916 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 EIF4A1P1-201ENST00000420241 934 ntBASIC8.15□□□□□ -1.1
MSX1P28360 RPS27AP7-201ENST00000422792 455 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AL591846.2-201ENST00000425161 358 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 VNN3-208ENST00000427187 1214 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 AL109659.1-201ENST00000431986 651 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 SPAG11A-205ENST00000434307 777 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 MTND6P15-201ENST00000441157 521 ntBASIC8.15□□□□□ -1.1
MSX1P28360 UBE2Q1-AS1-201ENST00000441613 432 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 RPL6P30-201ENST00000443382 862 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC073072.2-201ENST00000447425 348 ntBASIC8.15□□□□□ -1.1
MSX1P28360 IGBP1P3-201ENST00000447449 1000 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AL450023.2-201ENST00000453276 545 ntBASIC8.15□□□□□ -1.1
MSX1P28360 ITPKB-AS1-201ENST00000453525 538 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC8.15□□□□□ -1.1
MSX1P28360 NDUFB11P1-201ENST00000455818 465 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC092042.1-201ENST00000457115 509 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 AMD1P1-201ENST00000457220 922 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC108114.1-201ENST00000477321 437 ntBASIC8.15□□□□□ -1.1
MSX1P28360 LINC00544-202ENST00000481738 575 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 AL096701.3-202ENST00000483736 615 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 AC004069.2-201ENST00000505438 1114 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC026704.1-201ENST00000506435 770 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 AC021146.7-201ENST00000509604 775 ntBASIC8.15□□□□□ -1.1
MSX1P28360 LINC01095-203ENST00000512063 1175 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 AC008581.1-201ENST00000512650 385 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 RNU6-964P-201ENST00000516524 69 ntBASIC8.15□□□□□ -1.1
MSX1P28360 RNU6-405P-201ENST00000516637 110 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC144568.2-201ENST00000522481 944 ntTSL 5 BASIC8.15□□□□□ -1.1
MSX1P28360 AP001646.1-201ENST00000527936 915 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 AC002375.1-201ENST00000551161 581 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 NMNAT1P5-201ENST00000559657 841 ntBASIC8.15□□□□□ -1.1
MSX1P28360 LINC01834-201ENST00000567374 385 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 AC093525.3-201ENST00000568040 287 ntTSL 5 BASIC8.15□□□□□ -1.1
MSX1P28360 AC133065.3-201ENST00000577174 1161 ntBASIC8.15□□□□□ -1.1
MSX1P28360 LINC01444-202ENST00000581211 654 ntTSL 3 BASIC8.15□□□□□ -1.1
MSX1P28360 snoZ6.4-201ENST00000581669 55 ntBASIC8.15□□□□□ -1.1
MSX1P28360 C5orf58-206ENST00000593851 509 ntAPPRIS P5 TSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 PCBP1-AS1-244ENST00000594376 1197 ntTSL 5 BASIC8.15□□□□□ -1.1
MSX1P28360 AC008622.1-201ENST00000597106 284 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC113143.2-201ENST00000603849 394 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC018618.2-201ENST00000604770 446 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AL445222.1-201ENST00000607259 628 ntBASIC8.15□□□□□ -1.1
MSX1P28360 AC007336.2-201ENST00000611626 557 ntBASIC8.15□□□□□ -1.1
MSX1P28360 CT45A10-201ENST00000611668 1010 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 AC010678.1-201ENST00000614118 713 ntBASIC8.15□□□□□ -1.1
MSX1P28360 Metazoa_SRP.165-201ENST00000615681 260 ntBASIC8.15□□□□□ -1.1
MSX1P28360 GSTTP1-204ENST00000621179 920 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
MSX1P28360 OR12D2-206ENST00000623183 1069 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
MSX1P28360 OR1B1-201ENST00000623530 995 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
MSX1P28360 AC105339.4-201ENST00000624471 737 ntBASIC8.15□□□□□ -1.1
MSX1P28360 FLII-230ENST00000628188 156 ntTSL 5 BASIC8.15□□□□□ -1.1
MSX1P28360 AC007326.3-201ENST00000636418 176 ntBASIC8.15□□□□□ -1.1
MSX1P28360 SAMMSON-209ENST00000641222 1100 ntBASIC8.15□□□□□ -1.1
MSX1P28360 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 SNW1-201ENST00000261531 2163 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
MSX1P28360 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 SH3GL3-201ENST00000324537 2012 ntTSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 CCR3-201ENST00000357422 2000 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 AC107398.3-201ENST00000562284 7000 ntBASIC8.15□□□□□ -1.11
MSX1P28360 AC104806.2-201ENST00000502400 1991 ntTSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 CCDC162P-214ENST00000640755 1958 ntTSL 5 BASIC8.15□□□□□ -1.11
MSX1P28360 AGBL4-204ENST00000371839 2947 ntAPPRIS P2 TSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
MSX1P28360 LINC00943-203ENST00000535544 2815 ntTSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 ACTR6-202ENST00000546902 1877 ntTSL 2 BASIC8.15□□□□□ -1.11
MSX1P28360 MTHFD2-203ENST00000409804 1757 ntTSL 5 BASIC8.15□□□□□ -1.11
MSX1P28360 NAIP-204ENST00000503719 5347 ntTSL 5 BASIC8.15□□□□□ -1.11
MSX1P28360 IPO11-201ENST00000325324 4356 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
MSX1P28360 XRN2-201ENST00000377191 3437 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
MSX1P28360 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 SLC12A6-203ENST00000397702 4096 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 PSG8-204ENST00000406636 1610 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 AC015871.4-201ENST00000624650 2260 ntBASIC8.14□□□□□ -1.11
MSX1P28360 VPS45-201ENST00000369128 2224 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC8.14□□□□□ -1.11
MSX1P28360 GPR1-210ENST00000621141 2156 ntAPPRIS P1 TSL 3 BASIC8.14□□□□□ -1.11
MSX1P28360 TRHR-201ENST00000311762 1415 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSX1P28360 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC8.14□□□□□ -1.11
MSX1P28360 AL359715.3-201ENST00000569267 2123 ntBASIC8.14□□□□□ -1.11
MSX1P28360 TCF4-205ENST00000537578 2767 ntTSL 2 BASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms