Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AL021877.2-201ENST00000624442 10684 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 SF3A3P1-201ENST00000446317 1477 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AP001347.1-201ENST00000428809 1332 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 PAH-201ENST00000307000 2466 ntTSL 5 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 SSR1-210ENST00000489567 1893 ntTSL 3 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 HSPA8P11-201ENST00000508840 1898 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 STX18-AS1-206ENST00000608184 3047 ntTSL 3 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 HSPD1P4-201ENST00000547203 1702 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 CWC15-201ENST00000279839 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC007923.2-201ENST00000584218 1591 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC127070.3-201ENST00000503695 3263 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 TMCO5A-201ENST00000319669 1274 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 RNA5SP389-201ENST00000362610 115 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 RNA5SP226-201ENST00000362653 115 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 RNA5SP161-201ENST00000363871 115 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 RNA5SP149-201ENST00000364952 92 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 RNU1-122P-201ENST00000365538 156 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 PAGE5-203ENST00000374955 540 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 IGLV3-32-201ENST00000390303 383 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 TMEM199-202ENST00000395404 971 ntTSL 5 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC068138.1-201ENST00000412635 217 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 VDAC1P2-201ENST00000423609 850 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AL021939.1-201ENST00000441868 886 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC084809.2-201ENST00000444464 512 ntTSL 2 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 C15orf40-202ENST00000451195 518 ntTSL 3 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC092570.2-201ENST00000452117 1143 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 SNX18P8-201ENST00000455120 874 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC114982.2-201ENST00000461396 358 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 MKNK1-207ENST00000465783 464 ntTSL 2 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 RPL12P40-201ENST00000467028 488 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC005550.2-201ENST00000476382 318 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC008638.2-201ENST00000503840 715 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 HEXB-205ENST00000509579 806 ntTSL 2 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC233724.10-201ENST00000510454 409 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 SLN-202ENST00000525934 436 ntAPPRIS P1 TSL 3 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 KCTD21-AS1-204ENST00000528468 554 ntTSL 4 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 TBC1D21-202ENST00000535547 1005 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 GNPTAB-203ENST00000549165 373 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC009269.2-201ENST00000559892 474 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 RPLP1-205ENST00000560274 256 ntTSL 3 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 SNRPCP20-201ENST00000588011 210 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 YTHDF2P1-201ENST00000604759 1271 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC090373.1-201ENST00000623955 603 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AL117339.4-201ENST00000608335 7063 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
NKX3-1Q99801 AC018688.1-201ENST00000636528 1754 ntBASIC6.54□□□□□ -1.36
NKX3-1Q99801 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 PYHIN1-202ENST00000368138 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 CASP12-201ENST00000375726 1306 ntAPPRIS P5 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 CCRL2-201ENST00000357392 1593 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms