Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 AC239809.2-201ENST00000415381 517 ntBASIC18.45■□□□□ 0.54
LRFN1Q9P244 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.45■□□□□ 0.54
LRFN1Q9P244 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.45■□□□□ 0.54
LRFN1Q9P244 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
LRFN1Q9P244 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
LRFN1Q9P244 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
LRFN1Q9P244 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.45■□□□□ 0.54
LRFN1Q9P244 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LRFN1Q9P244 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 AL121603.2-201ENST00000557373 2117 ntBASIC18.44■□□□□ 0.54
LRFN1Q9P244 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.44■□□□□ 0.54
LRFN1Q9P244 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LRFN1Q9P244 FP700111.2-201ENST00000619190 1892 ntBASIC18.43■□□□□ 0.54
LRFN1Q9P244 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN1Q9P244 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN1Q9P244 PRKY-204ENST00000533551 1019 ntBASIC18.43■□□□□ 0.54
LRFN1Q9P244 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN1Q9P244 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN1Q9P244 AC006128.1-201ENST00000624704 1661 ntBASIC18.43■□□□□ 0.54
LRFN1Q9P244 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN1Q9P244 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN1Q9P244 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.43■□□□□ 0.54
LRFN1Q9P244 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LRFN1Q9P244 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.42■□□□□ 0.54
LRFN1Q9P244 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.42■□□□□ 0.54
LRFN1Q9P244 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.42■□□□□ 0.54
LRFN1Q9P244 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 HLA-G-202ENST00000376815 851 ntBASIC18.42■□□□□ 0.54
LRFN1Q9P244 HLA-G-203ENST00000376818 1127 ntBASIC18.42■□□□□ 0.54
LRFN1Q9P244 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
LRFN1Q9P244 AL596275.1-201ENST00000423464 877 ntBASIC18.42■□□□□ 0.54
LRFN1Q9P244 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.42■□□□□ 0.54
LRFN1Q9P244 AC124016.1-201ENST00000609552 612 ntBASIC18.42■□□□□ 0.54
LRFN1Q9P244 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
LRFN1Q9P244 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRFN1Q9P244 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN1Q9P244 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN1Q9P244 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN1Q9P244 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN1Q9P244 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 KRASP1-201ENST00000407852 552 ntBASIC18.41■□□□□ 0.54
LRFN1Q9P244 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 AC133681.1-201ENST00000465482 601 ntBASIC18.41■□□□□ 0.54
LRFN1Q9P244 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRFN1Q9P244 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.41■□□□□ 0.54
LRFN1Q9P244 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms