Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 KRT8P17-201ENST00000453110 1448 ntBASIC21.65■■□□□ 1.06
CNTN3Q9P232 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.65■■□□□ 1.06
CNTN3Q9P232 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CNTN3Q9P232 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CNTN3Q9P232 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CNTN3Q9P232 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
CNTN3Q9P232 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
CNTN3Q9P232 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CNTN3Q9P232 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CNTN3Q9P232 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CNTN3Q9P232 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.64■■□□□ 1.05
CNTN3Q9P232 AC124283.5-201ENST00000624661 1809 ntBASIC21.64■■□□□ 1.05
CNTN3Q9P232 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 UBE2SP1-201ENST00000450587 669 ntBASIC21.63■■□□□ 1.05
CNTN3Q9P232 AC093827.2-201ENST00000512654 315 ntBASIC21.63■■□□□ 1.05
CNTN3Q9P232 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CNTN3Q9P232 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CNTN3Q9P232 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CNTN3Q9P232 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CNTN3Q9P232 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CNTN3Q9P232 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CNTN3Q9P232 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CNTN3Q9P232 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 AC133681.1-201ENST00000465482 601 ntBASIC21.62■■□□□ 1.05
CNTN3Q9P232 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 AC124016.1-201ENST00000609552 612 ntBASIC21.62■■□□□ 1.05
CNTN3Q9P232 AL121829.2-201ENST00000620908 328 ntBASIC21.62■■□□□ 1.05
CNTN3Q9P232 FAM197Y4-202ENST00000622692 608 ntBASIC21.62■■□□□ 1.05
CNTN3Q9P232 AL023875.1-201ENST00000640777 796 ntBASIC21.62■■□□□ 1.05
CNTN3Q9P232 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
CNTN3Q9P232 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CNTN3Q9P232 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CNTN3Q9P232 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CNTN3Q9P232 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
CNTN3Q9P232 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.61■■□□□ 1.05
CNTN3Q9P232 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CNTN3Q9P232 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CNTN3Q9P232 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CNTN3Q9P232 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CNTN3Q9P232 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CNTN3Q9P232 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.61■■□□□ 1.05
CNTN3Q9P232 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.61■■□□□ 1.05
CNTN3Q9P232 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms