Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.03■□□□□ 0.64
SCN3AQ9NY46 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 AC124283.5-201ENST00000624661 1809 ntBASIC19.03■□□□□ 0.64
SCN3AQ9NY46 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN3AQ9NY46 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 POM121L13P-201ENST00000422362 380 ntBASIC19.02■□□□□ 0.64
SCN3AQ9NY46 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 AC008687.6-201ENST00000596318 630 ntBASIC19.02■□□□□ 0.64
SCN3AQ9NY46 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SCN3AQ9NY46 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SCN3AQ9NY46 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SCN3AQ9NY46 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.02■□□□□ 0.63
SCN3AQ9NY46 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SCN3AQ9NY46 LINC01521-201ENST00000504184 1943 ntBASIC19.02■□□□□ 0.63
SCN3AQ9NY46 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SCN3AQ9NY46 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SCN3AQ9NY46 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 POU5F1P3-201ENST00000428824 1078 ntBASIC19.01■□□□□ 0.63
SCN3AQ9NY46 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.01■□□□□ 0.63
SCN3AQ9NY46 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.01■□□□□ 0.63
SCN3AQ9NY46 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19■□□□□ 0.63
SCN3AQ9NY46 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 AC099778.1-201ENST00000568593 1911 ntBASIC19■□□□□ 0.63
SCN3AQ9NY46 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19■□□□□ 0.63
SCN3AQ9NY46 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19■□□□□ 0.63
SCN3AQ9NY46 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SCN3AQ9NY46 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SCN3AQ9NY46 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19■□□□□ 0.63
SCN3AQ9NY46 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19■□□□□ 0.63
SCN3AQ9NY46 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19■□□□□ 0.63
SCN3AQ9NY46 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19■□□□□ 0.63
SCN3AQ9NY46 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19■□□□□ 0.63
SCN3AQ9NY46 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19■□□□□ 0.63
SCN3AQ9NY46 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN3AQ9NY46 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN3AQ9NY46 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN3AQ9NY46 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN3AQ9NY46 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN3AQ9NY46 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN3AQ9NY46 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN3AQ9NY46 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms