Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP42Q9H9J4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP42Q9H9J4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP42Q9H9J4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
USP42Q9H9J4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
USP42Q9H9J4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP42Q9H9J4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 AC023632.3-201ENST00000521633 145 ntBASIC25.63■■□□□ 1.69
USP42Q9H9J4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP42Q9H9J4 AC073195.1-201ENST00000607241 877 ntBASIC25.63■■□□□ 1.69
USP42Q9H9J4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP42Q9H9J4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP42Q9H9J4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 AC079598.2-202ENST00000546624 1451 ntBASIC25.63■■□□□ 1.69
USP42Q9H9J4 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP42Q9H9J4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USP42Q9H9J4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USP42Q9H9J4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 NUDT16P1-203ENST00000513809 620 ntBASIC25.63■■□□□ 1.69
USP42Q9H9J4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC25.63■■□□□ 1.69
USP42Q9H9J4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USP42Q9H9J4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USP42Q9H9J4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USP42Q9H9J4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 AL049796.1-201ENST00000565336 1766 ntBASIC25.62■■□□□ 1.69
USP42Q9H9J4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USP42Q9H9J4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USP42Q9H9J4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
USP42Q9H9J4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.62■■□□□ 1.69
USP42Q9H9J4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
USP42Q9H9J4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
USP42Q9H9J4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
USP42Q9H9J4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
USP42Q9H9J4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 ARMC10P1-201ENST00000313754 855 ntBASIC25.61■■□□□ 1.69
USP42Q9H9J4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.61■■□□□ 1.69
USP42Q9H9J4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
USP42Q9H9J4 AL049597.2-201ENST00000565575 961 ntBASIC25.61■■□□□ 1.69
USP42Q9H9J4 REXO1L10P-201ENST00000615707 1290 ntBASIC25.61■■□□□ 1.69
USP42Q9H9J4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.6■■□□□ 1.69
USP42Q9H9J4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
USP42Q9H9J4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
USP42Q9H9J4 AF106564.1-201ENST00000607058 2553 ntBASIC25.6■■□□□ 1.69
USP42Q9H9J4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC25.6■■□□□ 1.69
USP42Q9H9J4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
USP42Q9H9J4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
USP42Q9H9J4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
USP42Q9H9J4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC25.6■■□□□ 1.69
USP42Q9H9J4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC25.6■■□□□ 1.69
USP42Q9H9J4 AL590326.2-201ENST00000625139 305 ntBASIC25.6■■□□□ 1.69
USP42Q9H9J4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
USP42Q9H9J4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP42Q9H9J4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP42Q9H9J4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP42Q9H9J4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 AP000525.1-201ENST00000608286 694 ntBASIC25.59■■□□□ 1.69
USP42Q9H9J4 AC005363.2-201ENST00000618631 242 ntBASIC25.59■■□□□ 1.69
USP42Q9H9J4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
USP42Q9H9J4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP42Q9H9J4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.69
USP42Q9H9J4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USP42Q9H9J4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USP42Q9H9J4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP42Q9H9J4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP42Q9H9J4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms