Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.62■□□□□ 0.41
LIME1Q9H400 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.62■□□□□ 0.41
LIME1Q9H400 AC124016.1-201ENST00000609552 612 ntBASIC17.62■□□□□ 0.41
LIME1Q9H400 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.62■□□□□ 0.41
LIME1Q9H400 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 CYP21A1P-202ENST00000354927 1481 ntBASIC17.62■□□□□ 0.41
LIME1Q9H400 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.62■□□□□ 0.41
LIME1Q9H400 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.62■□□□□ 0.41
LIME1Q9H400 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.61■□□□□ 0.41
LIME1Q9H400 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIME1Q9H400 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIME1Q9H400 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.61■□□□□ 0.41
LIME1Q9H400 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.61■□□□□ 0.41
LIME1Q9H400 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.61■□□□□ 0.41
LIME1Q9H400 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.61■□□□□ 0.41
LIME1Q9H400 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
LIME1Q9H400 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.61■□□□□ 0.41
LIME1Q9H400 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.61■□□□□ 0.41
LIME1Q9H400 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIME1Q9H400 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LIME1Q9H400 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIME1Q9H400 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LIME1Q9H400 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.61■□□□□ 0.41
LIME1Q9H400 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIME1Q9H400 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LIME1Q9H400 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIME1Q9H400 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIME1Q9H400 RCN1P1-201ENST00000400413 996 ntBASIC17.6■□□□□ 0.41
LIME1Q9H400 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIME1Q9H400 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.6■□□□□ 0.41
LIME1Q9H400 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.6■□□□□ 0.41
LIME1Q9H400 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.6■□□□□ 0.41
LIME1Q9H400 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIME1Q9H400 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.6■□□□□ 0.41
LIME1Q9H400 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIME1Q9H400 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIME1Q9H400 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.59■□□□□ 0.41
LIME1Q9H400 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.59■□□□□ 0.41
LIME1Q9H400 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
LIME1Q9H400 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIME1Q9H400 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
LIME1Q9H400 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
LIME1Q9H400 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.59■□□□□ 0.41
LIME1Q9H400 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.59■□□□□ 0.41
LIME1Q9H400 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.59■□□□□ 0.41
LIME1Q9H400 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.59■□□□□ 0.41
LIME1Q9H400 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LIME1Q9H400 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.59■□□□□ 0.41
LIME1Q9H400 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIME1Q9H400 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIME1Q9H400 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LIME1Q9H400 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIME1Q9H400 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.58■□□□□ 0.41
LIME1Q9H400 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.58■□□□□ 0.41
LIME1Q9H400 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.58■□□□□ 0.4
LIME1Q9H400 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
LIME1Q9H400 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.58■□□□□ 0.4
LIME1Q9H400 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.58■□□□□ 0.4
LIME1Q9H400 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
LIME1Q9H400 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
LIME1Q9H400 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.58■□□□□ 0.4
LIME1Q9H400 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.58■□□□□ 0.4
LIME1Q9H400 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.58■□□□□ 0.4
LIME1Q9H400 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.58■□□□□ 0.4
LIME1Q9H400 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.58■□□□□ 0.4
LIME1Q9H400 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.58■□□□□ 0.4
LIME1Q9H400 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.58■□□□□ 0.4
LIME1Q9H400 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 AC105020.6-201ENST00000621523 1217 ntBASIC17.58■□□□□ 0.4
LIME1Q9H400 AC113410.3-201ENST00000623366 203 ntBASIC17.58■□□□□ 0.4
LIME1Q9H400 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms