Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC28BQ9BUN5 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 AC091305.1-201ENST00000479476 895 ntBASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28BQ9BUN5 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC28BQ9BUN5 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 AC091799.1-201ENST00000422823 811 ntBASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 AC096631.2-201ENST00000436136 790 ntBASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 SLC7A5P2-201ENST00000553010 536 ntBASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 AF213884.3-201ENST00000563833 479 ntBASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 FAM21FP-204ENST00000608637 956 ntBASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28BQ9BUN5 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 AC007322.3-201ENST00000426526 701 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4L2-201ENST00000561772 1275 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 AC243732.1-201ENST00000612648 864 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4L6-201ENST00000626483 1275 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4L1-201ENST00000627662 1275 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4L8-201ENST00000629013 1275 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4L3-201ENST00000630187 1275 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4L7-201ENST00000630678 1275 ntBASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 DUX4L5-201ENST00000630834 1275 ntBASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms