Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 PRKY-204ENST00000533551 1019 ntBASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PAAF1Q9BRP4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 AL049637.2-201ENST00000641778 930 ntBASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 DPP3P2-201ENST00000416030 1696 ntBASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.49■■□□□ 1.03
PAAF1Q9BRP4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 AL031963.3-201ENST00000606441 850 ntBASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PAAF1Q9BRP4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 AC113410.3-201ENST00000623366 203 ntBASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
PAAF1Q9BRP4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 KRT8P20-201ENST00000423953 1409 ntBASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 HLA-G-202ENST00000376815 851 ntBASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 HLA-G-203ENST00000376818 1127 ntBASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 TSPY15P-201ENST00000457163 923 ntBASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 KRT8P17-201ENST00000453110 1448 ntBASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
PAAF1Q9BRP4 NBPF21P-201ENST00000425093 1451 ntBASIC21.45■■□□□ 1.03
PAAF1Q9BRP4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
PAAF1Q9BRP4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 RARRES2P10-201ENST00000564312 460 ntBASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PAAF1Q9BRP4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms