Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
NKX3-1Q99801 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.46■□□□□ 0.38
NKX3-1Q99801 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.46■□□□□ 0.38
NKX3-1Q99801 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.46■□□□□ 0.38
NKX3-1Q99801 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 AC120498.10-201ENST00000621827 505 ntBASIC17.45■□□□□ 0.38
NKX3-1Q99801 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX3-1Q99801 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
NKX3-1Q99801 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 AL162430.1-201ENST00000480705 870 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4L2-201ENST00000561772 1275 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4L6-201ENST00000626483 1275 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4L1-201ENST00000627662 1275 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4L8-201ENST00000629013 1275 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4L3-201ENST00000630187 1275 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4L7-201ENST00000630678 1275 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 DUX4L5-201ENST00000630834 1275 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 AIRN-201ENST00000601203 4374 ntBASIC17.44■□□□□ 0.38
NKX3-1Q99801 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
NKX3-1Q99801 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX3-1Q99801 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 AC027612.3-201ENST00000413684 1047 ntBASIC17.43■□□□□ 0.38
NKX3-1Q99801 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
NKX3-1Q99801 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX3-1Q99801 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 LINC02228-203ENST00000641970 1355 ntBASIC17.42■□□□□ 0.38
NKX3-1Q99801 AC120498.9-201ENST00000339021 3867 ntBASIC17.42■□□□□ 0.38
NKX3-1Q99801 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 AC004854.2-201ENST00000608450 1441 ntBASIC17.42■□□□□ 0.38
NKX3-1Q99801 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 AC034268.1-201ENST00000441047 882 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms