Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.42■□□□□ 0.54
TIMP4Q99727 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.42■□□□□ 0.54
TIMP4Q99727 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TIMP4Q99727 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
TIMP4Q99727 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.41■□□□□ 0.54
TIMP4Q99727 ESRRAP1-201ENST00000400596 1257 ntBASIC18.41■□□□□ 0.54
TIMP4Q99727 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.41■□□□□ 0.54
TIMP4Q99727 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.41■□□□□ 0.54
TIMP4Q99727 ITM2C-210ENST00000620962 501 ntBASIC18.41■□□□□ 0.54
TIMP4Q99727 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.41■□□□□ 0.54
TIMP4Q99727 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.41■□□□□ 0.54
TIMP4Q99727 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TIMP4Q99727 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.41■□□□□ 0.54
TIMP4Q99727 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TIMP4Q99727 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 AC087633.2-202ENST00000565166 1439 ntBASIC18.4■□□□□ 0.54
TIMP4Q99727 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TIMP4Q99727 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.4■□□□□ 0.54
TIMP4Q99727 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
TIMP4Q99727 UNC93B5-201ENST00000530315 699 ntBASIC18.4■□□□□ 0.54
TIMP4Q99727 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TIMP4Q99727 HLA-B-256ENST00000639848 1089 ntBASIC18.4■□□□□ 0.54
TIMP4Q99727 AC011484.1-201ENST00000377652 1995 ntBASIC18.4■□□□□ 0.54
TIMP4Q99727 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.4■□□□□ 0.54
TIMP4Q99727 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.4■□□□□ 0.54
TIMP4Q99727 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TIMP4Q99727 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.4■□□□□ 0.54
TIMP4Q99727 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.4■□□□□ 0.54
TIMP4Q99727 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TIMP4Q99727 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.54
TIMP4Q99727 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.54
TIMP4Q99727 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TIMP4Q99727 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.39■□□□□ 0.54
TIMP4Q99727 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
TIMP4Q99727 AC099778.1-201ENST00000568593 1911 ntBASIC18.39■□□□□ 0.53
TIMP4Q99727 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
TIMP4Q99727 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
TIMP4Q99727 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TIMP4Q99727 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TIMP4Q99727 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TIMP4Q99727 KRT18P29-201ENST00000397031 1267 ntBASIC18.39■□□□□ 0.53
TIMP4Q99727 PGM5P4-201ENST00000421970 445 ntBASIC18.39■□□□□ 0.53
TIMP4Q99727 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.39■□□□□ 0.53
TIMP4Q99727 AC060766.5-201ENST00000590539 871 ntBASIC18.39■□□□□ 0.53
TIMP4Q99727 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.39■□□□□ 0.53
TIMP4Q99727 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TIMP4Q99727 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TIMP4Q99727 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TIMP4Q99727 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.39■□□□□ 0.53
TIMP4Q99727 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TIMP4Q99727 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
TIMP4Q99727 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.39■□□□□ 0.53
TIMP4Q99727 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TIMP4Q99727 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
TIMP4Q99727 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
TIMP4Q99727 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.38■□□□□ 0.53
TIMP4Q99727 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TIMP4Q99727 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.38■□□□□ 0.53
TIMP4Q99727 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.38■□□□□ 0.53
TIMP4Q99727 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.38■□□□□ 0.53
TIMP4Q99727 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TIMP4Q99727 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.38■□□□□ 0.53
TIMP4Q99727 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.38■□□□□ 0.53
TIMP4Q99727 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms