Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDCA3Q99618 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CDCA3Q99618 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CDCA3Q99618 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 C9orf163-202ENST00000624034 2573 ntBASIC21.01■□□□□ 0.95
CDCA3Q99618 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 PTBP1P-201ENST00000554374 1601 ntBASIC21.01■□□□□ 0.95
CDCA3Q99618 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CDCA3Q99618 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.01■□□□□ 0.95
CDCA3Q99618 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.01■□□□□ 0.95
CDCA3Q99618 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 TSPY14P-201ENST00000303979 915 ntBASIC21.01■□□□□ 0.95
CDCA3Q99618 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CDCA3Q99618 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.01■□□□□ 0.95
CDCA3Q99618 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.01■□□□□ 0.95
CDCA3Q99618 AC010203.1-204ENST00000548782 407 ntBASIC21.01■□□□□ 0.95
CDCA3Q99618 C1QL1P1-201ENST00000568105 661 ntBASIC21.01■□□□□ 0.95
CDCA3Q99618 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CDCA3Q99618 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.01■□□□□ 0.95
CDCA3Q99618 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDCA3Q99618 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.01■□□□□ 0.95
CDCA3Q99618 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.01■□□□□ 0.95
CDCA3Q99618 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDCA3Q99618 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21■□□□□ 0.95
CDCA3Q99618 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CDCA3Q99618 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDCA3Q99618 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21■□□□□ 0.95
CDCA3Q99618 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21■□□□□ 0.95
CDCA3Q99618 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21■□□□□ 0.95
CDCA3Q99618 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21■□□□□ 0.95
CDCA3Q99618 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21■□□□□ 0.95
CDCA3Q99618 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21■□□□□ 0.95
CDCA3Q99618 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CDCA3Q99618 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CDCA3Q99618 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDCA3Q99618 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDCA3Q99618 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21■□□□□ 0.95
CDCA3Q99618 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CDCA3Q99618 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDCA3Q99618 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21■□□□□ 0.95
CDCA3Q99618 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDCA3Q99618 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDCA3Q99618 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CDCA3Q99618 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.99■□□□□ 0.95
CDCA3Q99618 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
CDCA3Q99618 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDCA3Q99618 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDCA3Q99618 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.99■□□□□ 0.95
CDCA3Q99618 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDCA3Q99618 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDCA3Q99618 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.99■□□□□ 0.95
CDCA3Q99618 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDCA3Q99618 AC128688.1-201ENST00000487626 519 ntBASIC20.99■□□□□ 0.95
CDCA3Q99618 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.99■□□□□ 0.95
CDCA3Q99618 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.99■□□□□ 0.95
CDCA3Q99618 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.99■□□□□ 0.95
CDCA3Q99618 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDCA3Q99618 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDCA3Q99618 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDCA3Q99618 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
CDCA3Q99618 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CDCA3Q99618 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CDCA3Q99618 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CDCA3Q99618 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CDCA3Q99618 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CDCA3Q99618 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CDCA3Q99618 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 MESTP1-201ENST00000404287 994 ntBASIC20.98■□□□□ 0.95
CDCA3Q99618 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.98■□□□□ 0.95
CDCA3Q99618 LINC01238-205ENST00000567549 1107 ntBASIC20.98■□□□□ 0.95
CDCA3Q99618 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDCA3Q99618 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.98■□□□□ 0.95
CDCA3Q99618 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDCA3Q99618 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDCA3Q99618 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDCA3Q99618 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CDCA3Q99618 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
CDCA3Q99618 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.97■□□□□ 0.95
CDCA3Q99618 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.97■□□□□ 0.95
CDCA3Q99618 WWOX-216ENST00000569818 525 ntBASIC20.97■□□□□ 0.95
CDCA3Q99618 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.97■□□□□ 0.95
CDCA3Q99618 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.97■□□□□ 0.95
CDCA3Q99618 AC006011.2-201ENST00000621313 1158 ntBASIC20.97■□□□□ 0.95
CDCA3Q99618 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.97■□□□□ 0.95
CDCA3Q99618 AP006587.1-201ENST00000534129 1502 ntBASIC20.97■□□□□ 0.95
CDCA3Q99618 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CDCA3Q99618 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms