Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
TTC28Q96AY4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.61■□□□□ 0.89
TTC28Q96AY4 AC092119.3-201ENST00000612618 583 ntBASIC20.61■□□□□ 0.89
TTC28Q96AY4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
TTC28Q96AY4 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TTC28Q96AY4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TTC28Q96AY4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TTC28Q96AY4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 AL441883.1-201ENST00000566170 1045 ntBASIC20.6■□□□□ 0.89
TTC28Q96AY4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 AL023803.3-201ENST00000615559 522 ntBASIC20.6■□□□□ 0.89
TTC28Q96AY4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TTC28Q96AY4 MIR1233-2-201ENST00000408138 82 ntBASIC20.6■□□□□ 0.89
TTC28Q96AY4 MIR1233-1-201ENST00000408722 82 ntBASIC20.6■□□□□ 0.89
TTC28Q96AY4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.6■□□□□ 0.89
TTC28Q96AY4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TTC28Q96AY4 AC141257.4-201ENST00000634557 245 ntBASIC20.6■□□□□ 0.89
TTC28Q96AY4 AC136944.6-201ENST00000634818 245 ntBASIC20.6■□□□□ 0.89
TTC28Q96AY4 AC116562.4-202ENST00000641738 218 ntBASIC20.6■□□□□ 0.89
TTC28Q96AY4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
TTC28Q96AY4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.59■□□□□ 0.89
TTC28Q96AY4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TTC28Q96AY4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.59■□□□□ 0.89
TTC28Q96AY4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
TTC28Q96AY4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TTC28Q96AY4 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.59■□□□□ 0.89
TTC28Q96AY4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.59■□□□□ 0.89
TTC28Q96AY4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TTC28Q96AY4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TTC28Q96AY4 AC116050.2-201ENST00000612102 1779 ntBASIC20.59■□□□□ 0.89
TTC28Q96AY4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TTC28Q96AY4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TTC28Q96AY4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TTC28Q96AY4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.59■□□□□ 0.89
TTC28Q96AY4 AL662844.1-201ENST00000546340 181 ntBASIC20.59■□□□□ 0.89
TTC28Q96AY4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.59■□□□□ 0.89
TTC28Q96AY4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
TTC28Q96AY4 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TTC28Q96AY4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.58■□□□□ 0.89
TTC28Q96AY4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TTC28Q96AY4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.58■□□□□ 0.89
TTC28Q96AY4 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TTC28Q96AY4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.58■□□□□ 0.88
TTC28Q96AY4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.58■□□□□ 0.88
TTC28Q96AY4 BX640515.1-201ENST00000617215 977 ntBASIC20.58■□□□□ 0.88
TTC28Q96AY4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TTC28Q96AY4 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PRELID1P1-202ENST00000567272 903 ntBASIC20.57■□□□□ 0.88
TTC28Q96AY4 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TTC28Q96AY4 AC004951.3-201ENST00000418645 1148 ntBASIC20.56■□□□□ 0.88
TTC28Q96AY4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.56■□□□□ 0.88
TTC28Q96AY4 AL023973.1-201ENST00000624619 620 ntBASIC20.56■□□□□ 0.88
TTC28Q96AY4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TTC28Q96AY4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TTC28Q96AY4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TTC28Q96AY4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TTC28Q96AY4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.56■□□□□ 0.88
TTC28Q96AY4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TTC28Q96AY4 AL139424.1-201ENST00000607572 797 ntBASIC20.56■□□□□ 0.88
TTC28Q96AY4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.56■□□□□ 0.88
TTC28Q96AY4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TTC28Q96AY4 CCR12P-201ENST00000446203 998 ntBASIC20.55■□□□□ 0.88
TTC28Q96AY4 AC140113.3-201ENST00000605663 199 ntBASIC20.55■□□□□ 0.88
TTC28Q96AY4 AL732292.2-201ENST00000609649 430 ntBASIC20.55■□□□□ 0.88
TTC28Q96AY4 AL356652.1-201ENST00000615962 565 ntBASIC20.55■□□□□ 0.88
TTC28Q96AY4 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.55■□□□□ 0.88
TTC28Q96AY4 ANOS2P-203ENST00000472227 1816 ntBASIC20.55■□□□□ 0.88
TTC28Q96AY4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TTC28Q96AY4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TTC28Q96AY4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TTC28Q96AY4 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.55■□□□□ 0.88
TTC28Q96AY4 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TTC28Q96AY4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
TTC28Q96AY4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms