Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 MIR2861-201ENST00000636310 90 ntBASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC44A3Q8N4M1 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 KRT16P1-201ENST00000399124 1418 ntBASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC44A3Q8N4M1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC44A3Q8N4M1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 AC087388.1-201ENST00000571370 1112 ntBASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC44A3Q8N4M1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 AC010203.1-204ENST00000548782 407 ntBASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms