Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 RPS2P55-201ENST00000397318 883 ntBASIC21.75■■□□□ 1.07
VPS52Q8N1B4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 AC239809.2-201ENST00000415381 517 ntBASIC21.75■■□□□ 1.07
VPS52Q8N1B4 AC133681.1-201ENST00000465482 601 ntBASIC21.75■■□□□ 1.07
VPS52Q8N1B4 AC107956.1-201ENST00000494359 873 ntBASIC21.75■■□□□ 1.07
VPS52Q8N1B4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 AC233702.5-201ENST00000584107 538 ntBASIC21.75■■□□□ 1.07
VPS52Q8N1B4 REXO1L12P-201ENST00000622156 912 ntBASIC21.75■■□□□ 1.07
VPS52Q8N1B4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 FEM1AP4-201ENST00000443167 1987 ntBASIC21.74■■□□□ 1.07
VPS52Q8N1B4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 AL390719.1-204ENST00000412397 1219 ntBASIC21.74■■□□□ 1.07
VPS52Q8N1B4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.74■■□□□ 1.07
VPS52Q8N1B4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.74■■□□□ 1.07
VPS52Q8N1B4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
VPS52Q8N1B4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 AC211429.1-201ENST00000415277 523 ntBASIC21.72■■□□□ 1.07
VPS52Q8N1B4 TSPY7P-201ENST00000431358 1114 ntBASIC21.72■■□□□ 1.07
VPS52Q8N1B4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
VPS52Q8N1B4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 KRASP1-201ENST00000407852 552 ntBASIC21.71■■□□□ 1.07
VPS52Q8N1B4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 AC110285.5-201ENST00000611501 352 ntBASIC21.71■■□□□ 1.07
VPS52Q8N1B4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS52Q8N1B4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
VPS52Q8N1B4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
VPS52Q8N1B4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 AF106564.1-201ENST00000607058 2553 ntBASIC21.7■■□□□ 1.06
VPS52Q8N1B4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS52Q8N1B4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms