Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 SLC7A5P1-201ENST00000568957 537 ntBASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF111Q6ZNA4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 BID-214ENST00000617586 542 ntTSL 5 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 AC092437.1-201ENST00000624794 1048 ntBASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 AC005332.7-201ENST00000614046 2005 ntBASIC19.46■□□□□ 0.71
RNF111Q6ZNA4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF111Q6ZNA4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 AC004911.1-201ENST00000416316 871 ntBASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF111Q6ZNA4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
RNF111Q6ZNA4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RNF111Q6ZNA4 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RNF111Q6ZNA4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms