Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC14.17□□□□□ -0.14
RPL39P62891 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 DPP3P2-201ENST00000416030 1696 ntBASIC14.17□□□□□ -0.14
RPL39P62891 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC14.17□□□□□ -0.14
RPL39P62891 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
RPL39P62891 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RPL39P62891 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC14.17□□□□□ -0.14
RPL39P62891 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 AICDA-202ENST00000537228 667 ntTSL 5 BASIC14.17□□□□□ -0.14
RPL39P62891 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 RARRES2P11-201ENST00000635158 484 ntBASIC14.17□□□□□ -0.14
RPL39P62891 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPL39P62891 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RPL39P62891 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
RPL39P62891 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC14.16□□□□□ -0.14
RPL39P62891 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC14.16□□□□□ -0.14
RPL39P62891 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RPL39P62891 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 MFF-207ENST00000409565 1548 ntTSL 2 BASIC14.16□□□□□ -0.14
RPL39P62891 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC14.16□□□□□ -0.14
RPL39P62891 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
RPL39P62891 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC14.16□□□□□ -0.14
RPL39P62891 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RPL39P62891 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 MFF-208ENST00000409616 1247 ntTSL 5 BASIC14.16□□□□□ -0.14
RPL39P62891 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC14.16□□□□□ -0.14
RPL39P62891 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC14.16□□□□□ -0.14
RPL39P62891 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.16□□□□□ -0.14
RPL39P62891 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
RPL39P62891 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPL39P62891 PWWP2AP1-201ENST00000429776 2273 ntBASIC14.16□□□□□ -0.14
RPL39P62891 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RPL39P62891 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC14.15□□□□□ -0.14
RPL39P62891 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.15□□□□□ -0.14
RPL39P62891 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RPL39P62891 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC14.15□□□□□ -0.14
RPL39P62891 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC14.15□□□□□ -0.14
RPL39P62891 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
RPL39P62891 TREX1-205ENST00000625293 1783 ntBASIC14.15□□□□□ -0.14
RPL39P62891 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
RPL39P62891 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC14.15□□□□□ -0.14
RPL39P62891 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC14.15□□□□□ -0.14
RPL39P62891 AC131281.2-201ENST00000520478 145 ntBASIC14.15□□□□□ -0.14
RPL39P62891 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC14.15□□□□□ -0.14
RPL39P62891 AC008175.2-201ENST00000612840 297 ntBASIC14.15□□□□□ -0.14
RPL39P62891 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RPL39P62891 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPL39P62891 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms