Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.05■□□□□ 0.96
EPHB3P54753 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.04■□□□□ 0.96
EPHB3P54753 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
EPHB3P54753 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.04■□□□□ 0.96
EPHB3P54753 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
EPHB3P54753 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.04■□□□□ 0.96
EPHB3P54753 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.04■□□□□ 0.96
EPHB3P54753 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.04■□□□□ 0.96
EPHB3P54753 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
EPHB3P54753 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.03■□□□□ 0.96
EPHB3P54753 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.03■□□□□ 0.96
EPHB3P54753 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
EPHB3P54753 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
EPHB3P54753 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
EPHB3P54753 KRT16P5-201ENST00000455284 522 ntBASIC21.03■□□□□ 0.96
EPHB3P54753 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.03■□□□□ 0.96
EPHB3P54753 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.03■□□□□ 0.96
EPHB3P54753 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.03■□□□□ 0.96
EPHB3P54753 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.03■□□□□ 0.96
EPHB3P54753 MIR4785-201ENST00000585005 73 ntBASIC21.03■□□□□ 0.96
EPHB3P54753 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
EPHB3P54753 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.03■□□□□ 0.96
EPHB3P54753 AC113410.3-201ENST00000623366 203 ntBASIC21.03■□□□□ 0.96
EPHB3P54753 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.03■□□□□ 0.96
EPHB3P54753 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
EPHB3P54753 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.03■□□□□ 0.96
EPHB3P54753 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.03■□□□□ 0.96
EPHB3P54753 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
EPHB3P54753 FP700111.2-201ENST00000619190 1892 ntBASIC21.03■□□□□ 0.96
EPHB3P54753 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
EPHB3P54753 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.02■□□□□ 0.96
EPHB3P54753 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
EPHB3P54753 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.02■□□□□ 0.96
EPHB3P54753 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
EPHB3P54753 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.02■□□□□ 0.96
EPHB3P54753 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.02■□□□□ 0.96
EPHB3P54753 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
EPHB3P54753 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
EPHB3P54753 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
EPHB3P54753 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
EPHB3P54753 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
EPHB3P54753 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.02■□□□□ 0.96
EPHB3P54753 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
EPHB3P54753 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
EPHB3P54753 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
EPHB3P54753 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
EPHB3P54753 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.01■□□□□ 0.95
EPHB3P54753 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.01■□□□□ 0.95
EPHB3P54753 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.01■□□□□ 0.95
EPHB3P54753 REXO1L12P-201ENST00000622156 912 ntBASIC21.01■□□□□ 0.95
EPHB3P54753 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
EPHB3P54753 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
EPHB3P54753 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.01■□□□□ 0.95
EPHB3P54753 AC006128.1-201ENST00000624704 1661 ntBASIC21.01■□□□□ 0.95
EPHB3P54753 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
EPHB3P54753 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
EPHB3P54753 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21■□□□□ 0.95
EPHB3P54753 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
EPHB3P54753 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
EPHB3P54753 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
EPHB3P54753 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
EPHB3P54753 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21■□□□□ 0.95
EPHB3P54753 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
EPHB3P54753 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
EPHB3P54753 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
EPHB3P54753 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
EPHB3P54753 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms