Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
LIG3P49916 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.99■□□□□ 0.95
LIG3P49916 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.99■□□□□ 0.95
LIG3P49916 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIG3P49916 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.98■□□□□ 0.95
LIG3P49916 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 AC112907.3-201ENST00000577781 2400 ntBASIC20.98■□□□□ 0.95
LIG3P49916 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.98■□□□□ 0.95
LIG3P49916 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 MIR663A-201ENST00000385250 93 ntBASIC20.98■□□□□ 0.95
LIG3P49916 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.98■□□□□ 0.95
LIG3P49916 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.98■□□□□ 0.95
LIG3P49916 CNN2P6-201ENST00000439038 900 ntBASIC20.98■□□□□ 0.95
LIG3P49916 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 AC006970.2-201ENST00000450065 779 ntBASIC20.98■□□□□ 0.95
LIG3P49916 TERF1P5-201ENST00000477545 1207 ntBASIC20.98■□□□□ 0.95
LIG3P49916 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.98■□□□□ 0.95
LIG3P49916 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.98■□□□□ 0.95
LIG3P49916 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LIG3P49916 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.98■□□□□ 0.95
LIG3P49916 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.98■□□□□ 0.95
LIG3P49916 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIG3P49916 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.97■□□□□ 0.95
LIG3P49916 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.97■□□□□ 0.95
LIG3P49916 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.97■□□□□ 0.95
LIG3P49916 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.97■□□□□ 0.95
LIG3P49916 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
LIG3P49916 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.97■□□□□ 0.95
LIG3P49916 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.97■□□□□ 0.95
LIG3P49916 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.97■□□□□ 0.95
LIG3P49916 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIG3P49916 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
LIG3P49916 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIG3P49916 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.96■□□□□ 0.95
LIG3P49916 AP000974.1-201ENST00000623909 2387 ntBASIC20.96■□□□□ 0.95
LIG3P49916 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIG3P49916 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIG3P49916 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIG3P49916 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.96■□□□□ 0.95
LIG3P49916 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 ID1-201ENST00000376105 1233 ntBASIC20.96■□□□□ 0.95
LIG3P49916 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.96■□□□□ 0.95
LIG3P49916 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.96■□□□□ 0.95
LIG3P49916 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIG3P49916 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
LIG3P49916 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIG3P49916 AC116562.4-201ENST00000641316 2276 ntBASIC20.95■□□□□ 0.95
LIG3P49916 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.95■□□□□ 0.94
LIG3P49916 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
LIG3P49916 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LIG3P49916 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.95■□□□□ 0.94
LIG3P49916 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
LIG3P49916 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIG3P49916 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.95■□□□□ 0.94
LIG3P49916 AC005181.1-201ENST00000604782 1256 ntBASIC20.95■□□□□ 0.94
LIG3P49916 AC013268.1-206ENST00000638368 961 ntBASIC20.95■□□□□ 0.94
LIG3P49916 AC112229.1-201ENST00000639295 961 ntBASIC20.95■□□□□ 0.94
LIG3P49916 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
LIG3P49916 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIG3P49916 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
LIG3P49916 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms