Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.13■□□□□ 0.65
MSX2P35548 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
MSX2P35548 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.13■□□□□ 0.65
MSX2P35548 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.13■□□□□ 0.65
MSX2P35548 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.13■□□□□ 0.65
MSX2P35548 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.13■□□□□ 0.65
MSX2P35548 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.13■□□□□ 0.65
MSX2P35548 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
MSX2P35548 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
MSX2P35548 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
MSX2P35548 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
MSX2P35548 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
MSX2P35548 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.12■□□□□ 0.65
MSX2P35548 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.12■□□□□ 0.65
MSX2P35548 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.12■□□□□ 0.65
MSX2P35548 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
MSX2P35548 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.12■□□□□ 0.65
MSX2P35548 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
MSX2P35548 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
MSX2P35548 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
MSX2P35548 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MSX2P35548 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.11■□□□□ 0.65
MSX2P35548 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.11■□□□□ 0.65
MSX2P35548 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.11■□□□□ 0.65
MSX2P35548 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.11■□□□□ 0.65
MSX2P35548 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.11■□□□□ 0.65
MSX2P35548 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 TSPY26P-201ENST00000476365 1326 ntBASIC19.11■□□□□ 0.65
MSX2P35548 UNC93B3-201ENST00000308076 687 ntBASIC19.11■□□□□ 0.65
MSX2P35548 AL356441.2-201ENST00000443009 864 ntBASIC19.11■□□□□ 0.65
MSX2P35548 AC008764.7-201ENST00000593779 1081 ntBASIC19.11■□□□□ 0.65
MSX2P35548 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
MSX2P35548 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MSX2P35548 BX119927.1-201ENST00000636596 1552 ntBASIC19.1■□□□□ 0.65
MSX2P35548 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.1■□□□□ 0.65
MSX2P35548 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
MSX2P35548 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MSX2P35548 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 Z82202.1-201ENST00000623446 1880 ntBASIC19.1■□□□□ 0.65
MSX2P35548 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MSX2P35548 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
MSX2P35548 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.1■□□□□ 0.65
MSX2P35548 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.1■□□□□ 0.65
MSX2P35548 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.1■□□□□ 0.65
MSX2P35548 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.1■□□□□ 0.65
MSX2P35548 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.1■□□□□ 0.65
MSX2P35548 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSX2P35548 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
MSX2P35548 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.1■□□□□ 0.65
MSX2P35548 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.09■□□□□ 0.65
MSX2P35548 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.09■□□□□ 0.65
MSX2P35548 AC024257.2-201ENST00000549699 147 ntBASIC19.09■□□□□ 0.65
MSX2P35548 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
MSX2P35548 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX2P35548 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.09■□□□□ 0.65
MSX2P35548 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
MSX2P35548 AC116050.2-201ENST00000612102 1779 ntBASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms