Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.06■■□□□ 1.12
TPM1P09493 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.06■■□□□ 1.12
TPM1P09493 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 AC010141.2-201ENST00000452426 721 ntBASIC22.06■■□□□ 1.12
TPM1P09493 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.06■■□□□ 1.12
TPM1P09493 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.06■■□□□ 1.12
TPM1P09493 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.06■■□□□ 1.12
TPM1P09493 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
TPM1P09493 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.06■■□□□ 1.12
TPM1P09493 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.06■■□□□ 1.12
TPM1P09493 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
TPM1P09493 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TPM1P09493 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.06■■□□□ 1.12
TPM1P09493 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC22.05■■□□□ 1.12
TPM1P09493 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.05■■□□□ 1.12
TPM1P09493 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.05■■□□□ 1.12
TPM1P09493 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.05■■□□□ 1.12
TPM1P09493 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.05■■□□□ 1.12
TPM1P09493 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.05■■□□□ 1.12
TPM1P09493 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.05■■□□□ 1.12
TPM1P09493 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.05■■□□□ 1.12
TPM1P09493 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
TPM1P09493 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TPM1P09493 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.05■■□□□ 1.12
TPM1P09493 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
TPM1P09493 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 DPP3P2-201ENST00000416030 1696 ntBASIC22.04■■□□□ 1.12
TPM1P09493 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
TPM1P09493 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC22.04■■□□□ 1.12
TPM1P09493 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
TPM1P09493 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.04■■□□□ 1.12
TPM1P09493 AL136967.2-201ENST00000623968 743 ntBASIC22.04■■□□□ 1.12
TPM1P09493 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC22.04■■□□□ 1.12
TPM1P09493 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
TPM1P09493 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TPM1P09493 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.03■■□□□ 1.12
TPM1P09493 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TPM1P09493 AC120498.9-201ENST00000339021 3867 ntBASIC22.03■■□□□ 1.12
TPM1P09493 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TPM1P09493 TMEM179-206ENST00000616017 1645 ntBASIC22.03■■□□□ 1.12
TPM1P09493 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TPM1P09493 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.03■■□□□ 1.12
TPM1P09493 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TPM1P09493 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TPM1P09493 DUX4L2-201ENST00000561772 1275 ntBASIC22.03■■□□□ 1.12
TPM1P09493 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.03■■□□□ 1.12
TPM1P09493 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.03■■□□□ 1.12
TPM1P09493 DUX4L6-201ENST00000626483 1275 ntBASIC22.03■■□□□ 1.12
TPM1P09493 DUX4L1-201ENST00000627662 1275 ntBASIC22.03■■□□□ 1.12
TPM1P09493 DUX4L8-201ENST00000629013 1275 ntBASIC22.03■■□□□ 1.12
TPM1P09493 DUX4L3-201ENST00000630187 1275 ntBASIC22.03■■□□□ 1.12
TPM1P09493 DUX4L7-201ENST00000630678 1275 ntBASIC22.03■■□□□ 1.12
TPM1P09493 DUX4L5-201ENST00000630834 1275 ntBASIC22.03■■□□□ 1.12
TPM1P09493 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
TPM1P09493 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
TPM1P09493 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TPM1P09493 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
TPM1P09493 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TPM1P09493 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.02■■□□□ 1.12
TPM1P09493 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TPM1P09493 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
TPM1P09493 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TPM1P09493 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TPM1P09493 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
TPM1P09493 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
TPM1P09493 AL158211.5-201ENST00000623583 2518 ntBASIC22.02■■□□□ 1.12
TPM1P09493 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC22.02■■□□□ 1.12
TPM1P09493 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC22.02■■□□□ 1.12
TPM1P09493 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
TPM1P09493 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TPM1P09493 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
TPM1P09493 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.11
TPM1P09493 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.11
TPM1P09493 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TPM1P09493 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
TPM1P09493 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
TPM1P09493 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TPM1P09493 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms