Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 AC098934.4-201ENST00000564127 592 ntBASIC19.32■□□□□ 0.68
LDLRP01130 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
LDLRP01130 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.32■□□□□ 0.68
LDLRP01130 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LDLRP01130 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LDLRP01130 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LDLRP01130 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 PRORSD1P-201ENST00000295112 541 ntBASIC19.31■□□□□ 0.68
LDLRP01130 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.31■□□□□ 0.68
LDLRP01130 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LDLRP01130 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.31■□□□□ 0.68
LDLRP01130 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.31■□□□□ 0.68
LDLRP01130 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LDLRP01130 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LDLRP01130 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDLRP01130 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LDLRP01130 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 KRT87P-202ENST00000534226 1464 ntBASIC19.3■□□□□ 0.68
LDLRP01130 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LDLRP01130 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LDLRP01130 AC018445.3-201ENST00000624177 1945 ntBASIC19.3■□□□□ 0.68
LDLRP01130 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LDLRP01130 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.3■□□□□ 0.68
LDLRP01130 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
LDLRP01130 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LDLRP01130 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.3■□□□□ 0.68
LDLRP01130 AC105036.2-201ENST00000569468 176 ntBASIC19.3■□□□□ 0.68
LDLRP01130 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LDLRP01130 AC133552.2-202ENST00000575694 574 ntBASIC19.3■□□□□ 0.68
LDLRP01130 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LDLRP01130 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LDLRP01130 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDLRP01130 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
LDLRP01130 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.29■□□□□ 0.68
LDLRP01130 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.29■□□□□ 0.68
LDLRP01130 MYCNOS-205ENST00000641950 531 ntBASIC19.29■□□□□ 0.68
LDLRP01130 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LDLRP01130 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.29■□□□□ 0.68
LDLRP01130 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LDLRP01130 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.28■□□□□ 0.68
LDLRP01130 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
LDLRP01130 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.28■□□□□ 0.68
LDLRP01130 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.28■□□□□ 0.68
LDLRP01130 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.28■□□□□ 0.68
LDLRP01130 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.28■□□□□ 0.68
LDLRP01130 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.28■□□□□ 0.68
LDLRP01130 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 BX323043.1-201ENST00000641006 1765 ntBASIC19.28■□□□□ 0.68
LDLRP01130 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.28■□□□□ 0.68
LDLRP01130 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.28■□□□□ 0.68
LDLRP01130 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.28■□□□□ 0.68
LDLRP01130 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
LDLRP01130 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDLRP01130 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms