Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.35■■□□□ 1.33
CDKL5O76039 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.35■■□□□ 1.33
CDKL5O76039 AL031963.3-201ENST00000606441 850 ntBASIC23.35■■□□□ 1.33
CDKL5O76039 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDKL5O76039 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.35■■□□□ 1.33
CDKL5O76039 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
CDKL5O76039 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.35■■□□□ 1.33
CDKL5O76039 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDKL5O76039 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC23.35■■□□□ 1.33
CDKL5O76039 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 KRT8P20-201ENST00000423953 1409 ntBASIC23.34■■□□□ 1.33
CDKL5O76039 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.34■■□□□ 1.33
CDKL5O76039 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.34■■□□□ 1.33
CDKL5O76039 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDKL5O76039 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.33■■□□□ 1.33
CDKL5O76039 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.33■■□□□ 1.33
CDKL5O76039 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.33■■□□□ 1.33
CDKL5O76039 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.33■■□□□ 1.33
CDKL5O76039 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.33■■□□□ 1.33
CDKL5O76039 NCF1B-203ENST00000435988 1254 ntBASIC23.33■■□□□ 1.33
CDKL5O76039 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.33■■□□□ 1.33
CDKL5O76039 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
CDKL5O76039 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDKL5O76039 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
CDKL5O76039 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
CDKL5O76039 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.33■■□□□ 1.32
CDKL5O76039 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
CDKL5O76039 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CDKL5O76039 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CDKL5O76039 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.33■■□□□ 1.32
CDKL5O76039 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CDKL5O76039 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.32■■□□□ 1.32
CDKL5O76039 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
CDKL5O76039 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CDKL5O76039 SLC25A24-204ENST00000569674 2357 ntBASIC23.32■■□□□ 1.32
CDKL5O76039 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDKL5O76039 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDKL5O76039 HLA-G-202ENST00000376815 851 ntBASIC23.32■■□□□ 1.32
CDKL5O76039 HLA-G-203ENST00000376818 1127 ntBASIC23.32■■□□□ 1.32
CDKL5O76039 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CDKL5O76039 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CDKL5O76039 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CDKL5O76039 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDKL5O76039 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDKL5O76039 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDKL5O76039 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.32■■□□□ 1.32
CDKL5O76039 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDKL5O76039 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDKL5O76039 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
CDKL5O76039 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CDKL5O76039 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CDKL5O76039 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CDKL5O76039 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.31■■□□□ 1.32
CDKL5O76039 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.31■■□□□ 1.32
CDKL5O76039 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 GPX1P1-201ENST00000388829 606 ntBASIC23.31■■□□□ 1.32
CDKL5O76039 SLC29A4P1-201ENST00000398760 971 ntBASIC23.31■■□□□ 1.32
CDKL5O76039 MIPEPP3-201ENST00000412105 444 ntBASIC23.31■■□□□ 1.32
CDKL5O76039 AC023632.3-201ENST00000521633 145 ntBASIC23.31■■□□□ 1.32
CDKL5O76039 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
CDKL5O76039 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CDKL5O76039 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.31■■□□□ 1.32
CDKL5O76039 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDKL5O76039 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDKL5O76039 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CDKL5O76039 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDKL5O76039 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDKL5O76039 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CDKL5O76039 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDKL5O76039 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CDKL5O76039 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.3■■□□□ 1.32
CDKL5O76039 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.3■■□□□ 1.32
CDKL5O76039 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDKL5O76039 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
CDKL5O76039 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.3■■□□□ 1.32
CDKL5O76039 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms