Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC9.04□□□□□ -0.96
USH2AO75445 NARF-205ENST00000412079 1760 ntTSL 5 BASIC9.04□□□□□ -0.96
USH2AO75445 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
USH2AO75445 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 DFFB-212ENST00000625756 649 ntTSL 5 BASIC9.04□□□□□ -0.96
USH2AO75445 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC9.04□□□□□ -0.96
USH2AO75445 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 PGM5P4-201ENST00000421970 445 ntBASIC9.04□□□□□ -0.96
USH2AO75445 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC9.04□□□□□ -0.96
USH2AO75445 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC9.04□□□□□ -0.96
USH2AO75445 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
USH2AO75445 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
USH2AO75445 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC9.03□□□□□ -0.96
USH2AO75445 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 HIST1H2APS4-201ENST00000362070 348 ntBASIC9.03□□□□□ -0.96
USH2AO75445 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
USH2AO75445 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC9.03□□□□□ -0.96
USH2AO75445 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC9.03□□□□□ -0.96
USH2AO75445 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
USH2AO75445 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC9.03□□□□□ -0.96
USH2AO75445 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 AC083849.1-201ENST00000615227 514 ntBASIC9.03□□□□□ -0.96
USH2AO75445 AC093323.1-202ENST00000635031 2045 ntBASIC9.03□□□□□ -0.96
USH2AO75445 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.96
USH2AO75445 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC9.03□□□□□ -0.96
USH2AO75445 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC9.03□□□□□ -0.96
USH2AO75445 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC9.03□□□□□ -0.96
USH2AO75445 AL445675.2-201ENST00000620291 557 ntBASIC9.03□□□□□ -0.96
USH2AO75445 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC9.03□□□□□ -0.96
USH2AO75445 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
USH2AO75445 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
USH2AO75445 KRT16P1-201ENST00000399124 1418 ntBASIC9.03□□□□□ -0.96
USH2AO75445 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC9.03□□□□□ -0.96
USH2AO75445 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC9.03□□□□□ -0.96
USH2AO75445 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
USH2AO75445 AC010542.4-201ENST00000563151 1910 ntBASIC9.03□□□□□ -0.96
USH2AO75445 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
USH2AO75445 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC9.02□□□□□ -0.96
USH2AO75445 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
USH2AO75445 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC9.02□□□□□ -0.96
USH2AO75445 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC9.02□□□□□ -0.96
USH2AO75445 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
USH2AO75445 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.96
USH2AO75445 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
USH2AO75445 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
USH2AO75445 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
USH2AO75445 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
USH2AO75445 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC9.02□□□□□ -0.97
USH2AO75445 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
USH2AO75445 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
USH2AO75445 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC9.02□□□□□ -0.97
USH2AO75445 AC011506.1-201ENST00000474329 610 ntBASIC9.02□□□□□ -0.97
USH2AO75445 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
USH2AO75445 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
USH2AO75445 AC092338.2-201ENST00000568827 1415 ntBASIC9.02□□□□□ -0.97
USH2AO75445 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC9.02□□□□□ -0.97
USH2AO75445 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC9.02□□□□□ -0.97
USH2AO75445 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC9.02□□□□□ -0.97
USH2AO75445 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
USH2AO75445 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
USH2AO75445 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC9.02□□□□□ -0.97
USH2AO75445 AL355385.1-201ENST00000606123 409 ntBASIC9.02□□□□□ -0.97
USH2AO75445 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC9.02□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms