Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PROM1O43490 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PROM1O43490 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PROM1O43490 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
PROM1O43490 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PROM1O43490 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.05■□□□□ 0.64
PROM1O43490 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PROM1O43490 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.05■□□□□ 0.64
PROM1O43490 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PROM1O43490 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
PROM1O43490 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PROM1O43490 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.04■□□□□ 0.64
PROM1O43490 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PROM1O43490 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PROM1O43490 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PROM1O43490 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PROM1O43490 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.04■□□□□ 0.64
PROM1O43490 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
PROM1O43490 AL109923.1-201ENST00000618799 583 ntBASIC19.04■□□□□ 0.64
PROM1O43490 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PROM1O43490 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PROM1O43490 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PROM1O43490 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.04■□□□□ 0.64
PROM1O43490 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 AC007952.6-201ENST00000573168 2673 ntBASIC19.03■□□□□ 0.64
PROM1O43490 AC003957.1-201ENST00000625108 2673 ntBASIC19.03■□□□□ 0.64
PROM1O43490 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
PROM1O43490 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.03■□□□□ 0.64
PROM1O43490 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
PROM1O43490 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.03■□□□□ 0.64
PROM1O43490 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.03■□□□□ 0.64
PROM1O43490 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
PROM1O43490 AC092118.2-201ENST00000613495 667 ntBASIC19.03■□□□□ 0.64
PROM1O43490 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 PTBP1P-201ENST00000554374 1601 ntBASIC19.03■□□□□ 0.64
PROM1O43490 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PROM1O43490 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
PROM1O43490 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.02■□□□□ 0.64
PROM1O43490 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.02■□□□□ 0.64
PROM1O43490 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.02■□□□□ 0.64
PROM1O43490 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.02■□□□□ 0.64
PROM1O43490 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.02■□□□□ 0.64
PROM1O43490 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.02■□□□□ 0.64
PROM1O43490 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.02■□□□□ 0.64
PROM1O43490 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.02■□□□□ 0.64
PROM1O43490 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.02■□□□□ 0.64
PROM1O43490 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
PROM1O43490 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PROM1O43490 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.02■□□□□ 0.63
PROM1O43490 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.02■□□□□ 0.63
PROM1O43490 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PROM1O43490 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
PROM1O43490 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.63
PROM1O43490 AC099778.1-201ENST00000568593 1911 ntBASIC19.02■□□□□ 0.63
PROM1O43490 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
PROM1O43490 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
PROM1O43490 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
PROM1O43490 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.01■□□□□ 0.63
PROM1O43490 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 MIR4758-201ENST00000577688 71 ntBASIC19.01■□□□□ 0.63
PROM1O43490 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.01■□□□□ 0.63
PROM1O43490 AC104771.1-201ENST00000603335 964 ntBASIC19.01■□□□□ 0.63
PROM1O43490 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.01■□□□□ 0.63
PROM1O43490 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PROM1O43490 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms