Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC113410.3-201ENST00000623366 203 ntBASIC20.53■□□□□ 0.88
HOXC11O43248 AC073912.3-201ENST00000624414 853 ntBASIC20.53■□□□□ 0.88
HOXC11O43248 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC11O43248 KRT17P2-201ENST00000300992 1314 ntBASIC20.53■□□□□ 0.88
HOXC11O43248 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HOXC11O43248 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 NBPF21P-201ENST00000425093 1451 ntBASIC20.52■□□□□ 0.88
HOXC11O43248 LINC00565-201ENST00000562710 2331 ntBASIC20.52■□□□□ 0.88
HOXC11O43248 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HOXC11O43248 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 KRT16P5-201ENST00000455284 522 ntBASIC20.52■□□□□ 0.88
HOXC11O43248 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
HOXC11O43248 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.52■□□□□ 0.88
HOXC11O43248 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.52■□□□□ 0.88
HOXC11O43248 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
HOXC11O43248 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC11O43248 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HOXC11O43248 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HOXC11O43248 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.52■□□□□ 0.88
HOXC11O43248 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HOXC11O43248 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
HOXC11O43248 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.52■□□□□ 0.87
HOXC11O43248 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HOXC11O43248 AF106564.1-201ENST00000607058 2553 ntBASIC20.51■□□□□ 0.87
HOXC11O43248 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HOXC11O43248 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.51■□□□□ 0.87
HOXC11O43248 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.51■□□□□ 0.87
HOXC11O43248 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
HOXC11O43248 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC11O43248 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC11O43248 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC11O43248 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC11O43248 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HOXC11O43248 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC11O43248 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
HOXC11O43248 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC11O43248 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC11O43248 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HOXC11O43248 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC11O43248 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC11O43248 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC11O43248 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC11O43248 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.5■□□□□ 0.87
HOXC11O43248 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
HOXC11O43248 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC11O43248 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC11O43248 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC11O43248 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.5■□□□□ 0.87
HOXC11O43248 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC11O43248 MIR4785-201ENST00000585005 73 ntBASIC20.5■□□□□ 0.87
HOXC11O43248 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC11O43248 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC11O43248 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC11O43248 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.49■□□□□ 0.87
HOXC11O43248 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC11O43248 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
HOXC11O43248 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC11O43248 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC11O43248 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
HOXC11O43248 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC11O43248 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC11O43248 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC11O43248 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.48■□□□□ 0.87
HOXC11O43248 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.48■□□□□ 0.87
HOXC11O43248 AC006128.1-201ENST00000624704 1661 ntBASIC20.48■□□□□ 0.87
HOXC11O43248 KRT8P17-201ENST00000453110 1448 ntBASIC20.48■□□□□ 0.87
HOXC11O43248 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HOXC11O43248 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC11O43248 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.48■□□□□ 0.87
HOXC11O43248 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.48■□□□□ 0.87
HOXC11O43248 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.48■□□□□ 0.87
HOXC11O43248 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.48■□□□□ 0.87
HOXC11O43248 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms