Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRRC53A6NM62 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRRC53A6NM62 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRRC53A6NM62 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 AL162412.1-201ENST00000567129 965 ntBASIC21.63■■□□□ 1.05
LRRC53A6NM62 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRRC53A6NM62 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LRRC53A6NM62 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.62■■□□□ 1.05
LRRC53A6NM62 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 MIR6821-201ENST00000617625 74 ntBASIC21.62■■□□□ 1.05
LRRC53A6NM62 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRRC53A6NM62 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
LRRC53A6NM62 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
LRRC53A6NM62 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.61■■□□□ 1.05
LRRC53A6NM62 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.61■■□□□ 1.05
LRRC53A6NM62 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.61■■□□□ 1.05
LRRC53A6NM62 MFSD11-216ENST00000590393 1141 ntBASIC21.61■■□□□ 1.05
LRRC53A6NM62 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.61■■□□□ 1.05
LRRC53A6NM62 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 PTBP1P-201ENST00000554374 1601 ntBASIC21.61■■□□□ 1.05
LRRC53A6NM62 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
LRRC53A6NM62 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRRC53A6NM62 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
LRRC53A6NM62 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.6■■□□□ 1.05
LRRC53A6NM62 AC087289.5-201ENST00000586076 3175 ntBASIC21.6■■□□□ 1.05
LRRC53A6NM62 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
LRRC53A6NM62 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.6■■□□□ 1.05
LRRC53A6NM62 KRT18P11-201ENST00000435214 1283 ntBASIC21.6■■□□□ 1.05
LRRC53A6NM62 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.6■■□□□ 1.05
LRRC53A6NM62 AC137761.2-201ENST00000561729 223 ntBASIC21.6■■□□□ 1.05
LRRC53A6NM62 AC145350.3-201ENST00000569033 163 ntBASIC21.6■■□□□ 1.05
LRRC53A6NM62 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.6■■□□□ 1.05
LRRC53A6NM62 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.6■■□□□ 1.05
LRRC53A6NM62 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRRC53A6NM62 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRRC53A6NM62 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRRC53A6NM62 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
LRRC53A6NM62 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRRC53A6NM62 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRRC53A6NM62 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRRC53A6NM62 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRRC53A6NM62 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms