Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
NKX3-1Q99801 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC011592.1-201ENST00000624647 3634 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 GABRR3-203ENST00000621172 1521 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AL445250.1-203ENST00000641829 1535 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 CPB2-AS1-204ENST00000606991 3218 ntTSL 2 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 PRLR-202ENST00000310101 1297 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 CPSF4L-201ENST00000344935 647 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 RNU1-47P-201ENST00000362966 163 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 CBWD1-207ENST00000382447 1241 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 RN7SKP119-201ENST00000410753 273 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 MS4A6A-201ENST00000412309 1284 ntTSL 2 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 RPS13P2-201ENST00000437890 455 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC012494.1-201ENST00000439259 1103 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC114928.1-201ENST00000446516 415 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AL135929.1-201ENST00000449287 552 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AL356311.1-201ENST00000451697 258 ntTSL 3 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AL355472.1-201ENST00000451795 575 ntTSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AL133232.1-201ENST00000458293 483 ntTSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 RN7SL201P-201ENST00000482306 296 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AL355076.1-201ENST00000484315 270 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 FTH1P23-201ENST00000492727 550 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC027607.1-201ENST00000503034 534 ntTSL 3 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC136424.1-201ENST00000518425 542 ntTSL 4 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC132192.1-201ENST00000531111 597 ntTSL 3 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC244131.1-201ENST00000542152 922 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC073611.1-201ENST00000550263 647 ntTSL 2 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 PFDN5-211ENST00000550846 392 ntTSL 2 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 PFDN5-214ENST00000551018 847 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC074051.4-201ENST00000564888 892 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC009171.1-201ENST00000572673 266 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 LINC01396-201ENST00000609099 527 ntTSL 3 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC069499.2-201ENST00000610665 382 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC090099.1-204ENST00000623626 849 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 CASC19-208ENST00000641056 1292 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 CASC19-227ENST00000641411 1285 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 AC119674.1-201ENST00000641611 1210 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 BX322650.1-201ENST00000332359 2143 ntBASIC6.56□□□□□ -1.36
NKX3-1Q99801 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 LINC00934-202ENST00000630357 2291 ntTSL 2 BASIC6.56□□□□□ -1.36
NKX3-1Q99801 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 RGS2-201ENST00000235382 1354 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
NKX3-1Q99801 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AC011008.2-201ENST00000624866 3352 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 NUCB2-201ENST00000323688 1905 ntAPPRIS ALT1 TSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 DEFB105A-201ENST00000334773 330 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 RNA5SP463-201ENST00000363030 120 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 IGKV3-15-201ENST00000390252 442 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 RFKP1-201ENST00000400940 428 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 MYB-206ENST00000420123 1051 ntTSL 5 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 RBMY2YP-201ENST00000423333 912 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 FTH1P5-201ENST00000425761 545 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 AL359502.1-201ENST00000437334 692 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 LYSMD1-202ENST00000440902 1003 ntTSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 RN7SL861P-201ENST00000473793 285 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 TMEM196-205ENST00000493519 687 ntTSL 5 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 USP9YP2-201ENST00000504503 1000 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 USP9YP1-201ENST00000513521 1002 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 LINC01094-206ENST00000514130 594 ntTSL 4 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 RN7SKP14-201ENST00000516000 329 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 CHCHD7-205ENST00000517933 580 ntAPPRIS P1 TSL 4 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 PTTG3P-201ENST00000521862 606 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 CHCHD7-215ENST00000523061 557 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 C11orf70-202ENST00000526781 845 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AP001124.1-201ENST00000529628 385 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 AC025419.1-202ENST00000535315 744 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AL590560.1-203ENST00000544342 408 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 LINC01490-201ENST00000548705 638 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AC027020.1-201ENST00000559349 632 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AC109460.4-201ENST00000561471 454 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 SPINT1-AS1-204ENST00000568419 629 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AL136141.1-201ENST00000605780 369 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 AL731533.2-201ENST00000607898 578 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
NKX3-1Q99801 EIF5P2-201ENST00000618904 1035 ntBASIC6.55□□□□□ -1.36
NKX3-1Q99801 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC6.55□□□□□ -1.36
NKX3-1Q99801 AL669830.1-201ENST00000621457 656 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms