Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 NPM1P31-201ENST00000399021 764 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 SS18L2P1-201ENST00000445923 213 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 OR6M3P-201ENST00000531567 700 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 AC006581.1-201ENST00000545706 496 ntTSL 3 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 MIR744-201ENST00000578242 98 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 AC061975.3-201ENST00000583209 244 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 AC005070.2-201ENST00000604391 260 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 AC012510.1-201ENST00000607946 759 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 uc_338.37-201ENST00000620113 186 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 AL121985.2-201ENST00000621192 555 ntBASIC8.85□□□□□ -0.99
HLA-DOAP06340 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 C1orf27-203ENST00000419367 1900 ntTSL 2 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 ERAP2-201ENST00000379904 3219 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 WDR75-201ENST00000314761 2701 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 PARP2-201ENST00000250416 1886 ntAPPRIS P3 TSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
HLA-DOAP06340 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
HLA-DOAP06340 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 TCF12-206ENST00000543579 1809 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
HLA-DOAP06340 SELP-202ENST00000367786 2402 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 VIT-208ENST00000497382 2650 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
HLA-DOAP06340 HIST1H4F-201ENST00000244537 312 ntAPPRIS P1 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 ELF5-201ENST00000257832 2321 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC023886.2-201ENST00000321285 411 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 EEF1A1P16-201ENST00000325349 1414 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 TMEM126B-201ENST00000358867 989 ntAPPRIS P3 TSL 2 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 U3.14-201ENST00000365363 227 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 RNA5SP238-201ENST00000365464 120 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 RNA5SP35-201ENST00000391257 129 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 BTG3P1-201ENST00000435859 716 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
HLA-DOAP06340 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC068790.1-201ENST00000536166 355 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC099314.1-201ENST00000563916 562 ntTSL 4 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 IGHV1OR15-3-201ENST00000564926 351 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC007861.1-201ENST00000576671 674 ntTSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AL583859.2-202ENST00000602311 505 ntTSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 AC024085.1-201ENST00000604299 432 ntBASIC8.84□□□□□ -0.99
HLA-DOAP06340 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 ASB8-218ENST00000629941 278 ntTSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 CCDC77-202ENST00000412006 2253 ntAPPRIS ALT2 TSL 2 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 NUDT13-202ENST00000357321 2102 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 PHYHIPL-202ENST00000373880 3578 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
HLA-DOAP06340 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
HLA-DOAP06340 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 GCNT2-216ENST00000495262 2214 ntAPPRIS ALT1 TSL 2 BASIC8.84□□□□□ -0.99
HLA-DOAP06340 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -1
HLA-DOAP06340 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC8.84□□□□□ -1
HLA-DOAP06340 NUGGC-201ENST00000413272 3887 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
HLA-DOAP06340 FSD1L-202ENST00000374710 7664 ntTSL 2 BASIC8.83□□□□□ -1
HLA-DOAP06340 RGS6-205ENST00000406236 1476 ntAPPRIS ALT1 TSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 PRSS51-203ENST00000636217 2255 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
HLA-DOAP06340 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 SLC10A7-201ENST00000335472 2798 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 LINC01206-202ENST00000474045 2240 ntTSL 5 BASIC8.83□□□□□ -1
HLA-DOAP06340 AL355103.1-201ENST00000557246 2226 ntTSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
HLA-DOAP06340 OR2G6-201ENST00000343414 1049 ntAPPRIS P1 BASIC8.83□□□□□ -1
HLA-DOAP06340 AC090114.1-201ENST00000393266 448 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 MEAF6P1-201ENST00000416092 327 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 EEF1GP7-201ENST00000422983 703 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 CYP4F34P-201ENST00000425951 481 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 AL121983.2-201ENST00000426899 688 ntTSL 3 BASIC8.83□□□□□ -1
HLA-DOAP06340 AL954705.1-201ENST00000435277 559 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 AL645568.1-202ENST00000437190 1016 ntTSL 5 BASIC8.83□□□□□ -1
HLA-DOAP06340 AC005040.1-201ENST00000437783 482 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 AC019080.2-201ENST00000453859 394 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 RN7SL776P-201ENST00000493390 268 ntBASIC8.83□□□□□ -1
HLA-DOAP06340 LINC00992-201ENST00000504107 617 ntTSL 2 BASIC8.83□□□□□ -1
HLA-DOAP06340 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC8.83□□□□□ -1
HLA-DOAP06340 IGKV3D-31-201ENST00000519131 281 ntBASIC8.83□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms