Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC104083.1-201ENST00000569449 2615 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 KIAA1257-205ENST00000515659 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 PPIH-201ENST00000304979 752 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 DEFB105B-201ENST00000335510 331 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 GSTM1-203ENST00000369819 790 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 RNA5SP185-201ENST00000390963 114 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 STAG3L1-201ENST00000404291 496 ntTSL 3 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 RPSAP72-201ENST00000407020 358 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 PPIAP25-201ENST00000420177 540 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC016877.1-201ENST00000420417 464 ntTSL 3 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC098483.1-202ENST00000436515 967 ntTSL 2 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 LINC01865-202ENST00000436808 853 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC016734.1-201ENST00000436998 654 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 TTC28-AS1-216ENST00000437713 854 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 TTC21B-AS1-202ENST00000443032 544 ntTSL 4 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AL158168.1-201ENST00000443282 357 ntTSL 3 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 MIR4435-2HG-211ENST00000443467 826 ntTSL 3 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC138089.1-201ENST00000450847 967 ntTSL 2 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 TNR-IT1-201ENST00000455447 630 ntTSL 3 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 RN7SL621P-201ENST00000472565 299 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 RN7SL862P-201ENST00000491550 298 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 SSX8-201ENST00000506270 579 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC017007.5-201ENST00000511590 874 ntTSL 2 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC090692.1-201ENST00000531569 541 ntTSL 3 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 CCDC58P5-201ENST00000536923 432 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC034105.2-201ENST00000561866 238 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC007495.1-202ENST00000565155 559 ntTSL 2 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 VDAC1P8-210ENST00000610068 1251 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AL133520.1-201ENST00000610430 700 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC239809.3-218ENST00000616018 1023 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AC074029.3-201ENST00000618623 312 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 MIR3120-201ENST00000636555 81 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 LINC00682-204ENST00000637677 931 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 THAP12P1-201ENST00000398672 2203 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 AL031676.1-201ENST00000412519 1586 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 UBE2U-206ENST00000611228 1550 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
NKX3-1Q99801 AL133320.1-201ENST00000621423 2352 ntBASIC6.59□□□□□ -1.35
NKX3-1Q99801 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC6.59□□□□□ -1.35
NKX3-1Q99801 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.36
NKX3-1Q99801 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC6.59□□□□□ -1.36
NKX3-1Q99801 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
NKX3-1Q99801 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CCDC63-204ENST00000552694 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 MORC1-202ENST00000483760 3056 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 ORM1-201ENST00000259396 802 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 OR51A10P-201ENST00000307165 937 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 OR10J3-201ENST00000332217 990 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CTH-201ENST00000346806 1196 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CSNK2B-202ENST00000375866 936 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 PPP1R7-204ENST00000402734 883 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 RAET1K-201ENST00000403651 784 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 OR4E2-201ENST00000408935 942 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AL031282.1-204ENST00000418950 497 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 RAC1P4-201ENST00000419413 579 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 AC007422.2-201ENST00000419809 167 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AL355516.1-201ENST00000422082 746 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 RPL5P6-201ENST00000425640 886 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 AL356387.1-201ENST00000426321 476 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AC140479.1-201ENST00000440423 337 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 LINC02243-201ENST00000441841 961 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AL121908.1-201ENST00000443055 668 ntTSL 4 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 SUMO2P10-201ENST00000452006 288 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 AL583856.1-201ENST00000454078 1101 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 AC234782.3-201ENST00000461229 433 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 AC096922.1-201ENST00000461635 651 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 RN7SL335P-201ENST00000482790 304 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 AL445187.1-201ENST00000502685 260 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 AP003174.3-201ENST00000537926 516 ntBASIC6.58□□□□□ -1.36
NKX3-1Q99801 CCDC60-204ENST00000539847 581 ntAPPRIS ALT2 TSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 AC243972.1-201ENST00000542992 570 ntTSL 4 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 LACRT-203ENST00000547511 504 ntAPPRIS ALT2 TSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CCDC32-203ENST00000558113 576 ntTSL 3 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 CCDC32-212ENST00000560305 557 ntTSL 4 BASIC6.58□□□□□ -1.36
NKX3-1Q99801 MIR4437-201ENST00000581331 60 ntBASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms