Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA2Q9Y261 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 FAM21FP-204ENST00000608637 956 ntBASIC16.26■□□□□ 0.19
FOXA2Q9Y261 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA2Q9Y261 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 AC007322.1-201ENST00000426983 750 ntBASIC16.25■□□□□ 0.19
FOXA2Q9Y261 CDV3P1-201ENST00000471403 739 ntBASIC16.25■□□□□ 0.19
FOXA2Q9Y261 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 AL591742.1-201ENST00000604433 565 ntBASIC16.25■□□□□ 0.19
FOXA2Q9Y261 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 AC073111.5-205ENST00000641717 521 ntBASIC16.25■□□□□ 0.19
FOXA2Q9Y261 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA2Q9Y261 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.24■□□□□ 0.19
FOXA2Q9Y261 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
FOXA2Q9Y261 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 CNN2P6-201ENST00000439038 900 ntBASIC16.23■□□□□ 0.19
FOXA2Q9Y261 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 DPP3P2-201ENST00000416030 1696 ntBASIC16.23■□□□□ 0.19
FOXA2Q9Y261 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA2Q9Y261 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms