Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NOTCH3Q9UM47 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC15.51■□□□□ 0.07
NOTCH3Q9UM47 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NOTCH3Q9UM47 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NOTCH3Q9UM47 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NOTCH3Q9UM47 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NOTCH3Q9UM47 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 KRT18P21-201ENST00000515767 1272 ntBASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 LY6E-205ENST00000519611 635 ntTSL 3 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 AP003071.4-201ENST00000562276 1284 ntBASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
NOTCH3Q9UM47 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 RCN1P1-201ENST00000400413 996 ntBASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 EXOC3-AS1-202ENST00000623673 1663 ntBASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NOTCH3Q9UM47 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC15.48■□□□□ 0.07
NOTCH3Q9UM47 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms