Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.71■■□□□ 1.07
CNTN3Q9P232 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CNTN3Q9P232 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.71■■□□□ 1.07
CNTN3Q9P232 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CNTN3Q9P232 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
CNTN3Q9P232 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CNTN3Q9P232 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CNTN3Q9P232 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CNTN3Q9P232 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 MTDHP1-201ENST00000605323 784 ntBASIC21.7■■□□□ 1.06
CNTN3Q9P232 AL031963.3-201ENST00000606441 850 ntBASIC21.7■■□□□ 1.06
CNTN3Q9P232 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CNTN3Q9P232 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CNTN3Q9P232 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CNTN3Q9P232 AC092720.2-201ENST00000602388 1665 ntBASIC21.69■■□□□ 1.06
CNTN3Q9P232 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CNTN3Q9P232 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.69■■□□□ 1.06
CNTN3Q9P232 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CNTN3Q9P232 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.69■■□□□ 1.06
CNTN3Q9P232 RPPH1-201ENST00000516869 333 ntBASIC21.69■■□□□ 1.06
CNTN3Q9P232 C1QBPP2-201ENST00000528754 825 ntBASIC21.69■■□□□ 1.06
CNTN3Q9P232 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.69■■□□□ 1.06
CNTN3Q9P232 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.69■■□□□ 1.06
CNTN3Q9P232 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CNTN3Q9P232 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.69■■□□□ 1.06
CNTN3Q9P232 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CNTN3Q9P232 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.69■■□□□ 1.06
CNTN3Q9P232 KRT8P20-201ENST00000423953 1409 ntBASIC21.69■■□□□ 1.06
CNTN3Q9P232 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CNTN3Q9P232 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
CNTN3Q9P232 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CNTN3Q9P232 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CNTN3Q9P232 HLA-G-202ENST00000376815 851 ntBASIC21.68■■□□□ 1.06
CNTN3Q9P232 HLA-G-203ENST00000376818 1127 ntBASIC21.68■■□□□ 1.06
CNTN3Q9P232 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CNTN3Q9P232 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CNTN3Q9P232 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CNTN3Q9P232 DPP3P2-201ENST00000416030 1696 ntBASIC21.68■■□□□ 1.06
CNTN3Q9P232 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CNTN3Q9P232 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.68■■□□□ 1.06
CNTN3Q9P232 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CNTN3Q9P232 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CNTN3Q9P232 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CNTN3Q9P232 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.66■■□□□ 1.06
CNTN3Q9P232 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 SLC25A24-204ENST00000569674 2357 ntBASIC21.66■■□□□ 1.06
CNTN3Q9P232 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.66■■□□□ 1.06
CNTN3Q9P232 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.66■■□□□ 1.06
CNTN3Q9P232 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.66■■□□□ 1.06
CNTN3Q9P232 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CNTN3Q9P232 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.66■■□□□ 1.06
CNTN3Q9P232 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CNTN3Q9P232 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CNTN3Q9P232 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms