Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC092667.1-201ENST00000434301 2586 ntBASIC17.65■□□□□ 0.42
LIME1Q9H400 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 AC012618.2-201ENST00000428058 849 ntBASIC17.65■□□□□ 0.42
LIME1Q9H400 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.65■□□□□ 0.42
LIME1Q9H400 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.65■□□□□ 0.42
LIME1Q9H400 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIME1Q9H400 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIME1Q9H400 AL023875.1-201ENST00000640777 796 ntBASIC17.65■□□□□ 0.42
LIME1Q9H400 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 KRT17P2-201ENST00000300992 1314 ntBASIC17.65■□□□□ 0.42
LIME1Q9H400 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
LIME1Q9H400 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.42
LIME1Q9H400 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.42
LIME1Q9H400 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.64■□□□□ 0.41
LIME1Q9H400 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.64■□□□□ 0.41
LIME1Q9H400 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
LIME1Q9H400 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.64■□□□□ 0.41
LIME1Q9H400 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.64■□□□□ 0.41
LIME1Q9H400 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.64■□□□□ 0.41
LIME1Q9H400 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
LIME1Q9H400 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
LIME1Q9H400 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LIME1Q9H400 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
LIME1Q9H400 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LIME1Q9H400 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.64■□□□□ 0.41
LIME1Q9H400 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIME1Q9H400 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LIME1Q9H400 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.63■□□□□ 0.41
LIME1Q9H400 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LIME1Q9H400 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.63■□□□□ 0.41
LIME1Q9H400 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
LIME1Q9H400 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 AC087499.1-201ENST00000418141 1075 ntBASIC17.63■□□□□ 0.41
LIME1Q9H400 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.63■□□□□ 0.41
LIME1Q9H400 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.63■□□□□ 0.41
LIME1Q9H400 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.63■□□□□ 0.41
LIME1Q9H400 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.63■□□□□ 0.41
LIME1Q9H400 MTDHP1-201ENST00000605323 784 ntBASIC17.63■□□□□ 0.41
LIME1Q9H400 AL049637.2-201ENST00000641778 930 ntBASIC17.63■□□□□ 0.41
LIME1Q9H400 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.63■□□□□ 0.41
LIME1Q9H400 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.63■□□□□ 0.41
LIME1Q9H400 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.63■□□□□ 0.41
LIME1Q9H400 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.63■□□□□ 0.41
LIME1Q9H400 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIME1Q9H400 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.63■□□□□ 0.41
LIME1Q9H400 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.62■□□□□ 0.41
LIME1Q9H400 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.62■□□□□ 0.41
LIME1Q9H400 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
LIME1Q9H400 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LIME1Q9H400 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.62■□□□□ 0.41
LIME1Q9H400 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
LIME1Q9H400 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIME1Q9H400 AC007322.3-201ENST00000426526 701 ntBASIC17.62■□□□□ 0.41
LIME1Q9H400 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.62■□□□□ 0.41
LIME1Q9H400 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.62■□□□□ 0.41
LIME1Q9H400 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.62■□□□□ 0.41
LIME1Q9H400 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.62■□□□□ 0.41
LIME1Q9H400 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms