Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.58■□□□□ 0.89
CHFRQ96EP1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.58■□□□□ 0.89
CHFRQ96EP1 AC026471.5-201ENST00000615068 467 ntBASIC20.58■□□□□ 0.89
CHFRQ96EP1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHFRQ96EP1 EP400NL-214ENST00000641289 2402 ntBASIC20.58■□□□□ 0.88
CHFRQ96EP1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHFRQ96EP1 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHFRQ96EP1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CHFRQ96EP1 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 HTR7P1-201ENST00000538670 1336 ntBASIC20.57■□□□□ 0.88
CHFRQ96EP1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 RCN1P1-201ENST00000400413 996 ntBASIC20.57■□□□□ 0.88
CHFRQ96EP1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.57■□□□□ 0.88
CHFRQ96EP1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHFRQ96EP1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 KRT16P5-201ENST00000455284 522 ntBASIC20.56■□□□□ 0.88
CHFRQ96EP1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 AP003071.4-201ENST00000562276 1284 ntBASIC20.56■□□□□ 0.88
CHFRQ96EP1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.56■□□□□ 0.88
CHFRQ96EP1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 NBPF21P-201ENST00000425093 1451 ntBASIC20.56■□□□□ 0.88
CHFRQ96EP1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHFRQ96EP1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CHFRQ96EP1 AL049796.1-201ENST00000565336 1766 ntBASIC20.55■□□□□ 0.88
CHFRQ96EP1 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHFRQ96EP1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHFRQ96EP1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.55■□□□□ 0.88
CHFRQ96EP1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
CHFRQ96EP1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHFRQ96EP1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHFRQ96EP1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHFRQ96EP1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHFRQ96EP1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHFRQ96EP1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CHFRQ96EP1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.55■□□□□ 0.88
CHFRQ96EP1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHFRQ96EP1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHFRQ96EP1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CHFRQ96EP1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
CHFRQ96EP1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.54■□□□□ 0.88
CHFRQ96EP1 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.54■□□□□ 0.88
CHFRQ96EP1 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHFRQ96EP1 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHFRQ96EP1 CD177P1-201ENST00000606252 935 ntBASIC20.54■□□□□ 0.88
CHFRQ96EP1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHFRQ96EP1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.54■□□□□ 0.88
CHFRQ96EP1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHFRQ96EP1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CHFRQ96EP1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 AC121338.2-201ENST00000622535 1744 ntBASIC20.53■□□□□ 0.88
CHFRQ96EP1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.53■□□□□ 0.88
CHFRQ96EP1 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.53■□□□□ 0.88
CHFRQ96EP1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHFRQ96EP1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.53■□□□□ 0.88
CHFRQ96EP1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms