Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SMC1BQ8NDV3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 AC116407.4-201ENST00000623319 1061 ntBASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC24.01■■□□□ 1.43
SMC1BQ8NDV3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
SMC1BQ8NDV3 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC24■■□□□ 1.43
SMC1BQ8NDV3 AC023632.3-201ENST00000521633 145 ntBASIC24■■□□□ 1.43
SMC1BQ8NDV3 AC026271.3-201ENST00000571884 352 ntBASIC24■■□□□ 1.43
SMC1BQ8NDV3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
SMC1BQ8NDV3 AC087742.1-201ENST00000575880 1738 ntBASIC24■■□□□ 1.43
SMC1BQ8NDV3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC24■■□□□ 1.43
SMC1BQ8NDV3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SMC1BQ8NDV3 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC24■■□□□ 1.43
SMC1BQ8NDV3 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 AC097488.1-201ENST00000507834 756 ntBASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 AC004263.2-201ENST00000617183 678 ntBASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 AC005332.1-201ENST00000577698 1310 ntBASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SMC1BQ8NDV3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
SMC1BQ8NDV3 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 AL671277.2-201ENST00000458060 996 ntBASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC23.97■■□□□ 1.43
SMC1BQ8NDV3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms