Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 PTBP1P-201ENST00000554374 1601 ntBASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 RCN1P1-201ENST00000400413 996 ntBASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 KRT16P5-201ENST00000455284 522 ntBASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 CD177P1-201ENST00000606252 935 ntBASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
USHBP1Q8N6Y0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC26.68■■□□□ 1.86
USHBP1Q8N6Y0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 AC097493.4-201ENST00000641197 219 ntBASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC26.67■■□□□ 1.86
USHBP1Q8N6Y0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
USHBP1Q8N6Y0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
USHBP1Q8N6Y0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC26.66■■□□□ 1.86
USHBP1Q8N6Y0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC26.66■■□□□ 1.86
USHBP1Q8N6Y0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
USHBP1Q8N6Y0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
USHBP1Q8N6Y0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC26.66■■□□□ 1.86
USHBP1Q8N6Y0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 PLK5-205ENST00000642079 1969 ntBASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
USHBP1Q8N6Y0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
USHBP1Q8N6Y0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
USHBP1Q8N6Y0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC26.64■■□□□ 1.86
USHBP1Q8N6Y0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC26.64■■□□□ 1.86
USHBP1Q8N6Y0 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
USHBP1Q8N6Y0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.64■■□□□ 1.86
USHBP1Q8N6Y0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC26.64■■□□□ 1.85
USHBP1Q8N6Y0 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
USHBP1Q8N6Y0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC26.64■■□□□ 1.85
USHBP1Q8N6Y0 FEM1AP4-201ENST00000443167 1987 ntBASIC26.64■■□□□ 1.85
USHBP1Q8N6Y0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
USHBP1Q8N6Y0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
USHBP1Q8N6Y0 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 AL355355.2-201ENST00000442321 338 ntBASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 AL121906.2-201ENST00000621597 723 ntBASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.63■■□□□ 1.85
USHBP1Q8N6Y0 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 BID-212ENST00000614949 1988 ntTSL 5 BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 PPOX-219ENST00000544598 813 ntTSL 2 BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms