Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
HDDC3Q8N4P3 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDDC3Q8N4P3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 AC239809.2-201ENST00000415381 517 ntBASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 AC023632.3-201ENST00000521633 145 ntBASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 MIR4785-201ENST00000585005 73 ntBASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 AC133561.5-201ENST00000635547 218 ntBASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 AL135905.2-201ENST00000584934 1404 ntBASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 PLK5-205ENST00000642079 1969 ntBASIC20.24■□□□□ 0.83
HDDC3Q8N4P3 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 AC124016.1-201ENST00000609552 612 ntBASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDDC3Q8N4P3 LINC00565-201ENST00000562710 2331 ntBASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 KRASP1-201ENST00000407852 552 ntBASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HDDC3Q8N4P3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms