Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 AL121906.2-201ENST00000621597 723 ntBASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPAS3Q8IXF0 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 FAM197Y1-201ENST00000421178 764 ntBASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPAS3Q8IXF0 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NPAS3Q8IXF0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NPAS3Q8IXF0 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NPAS3Q8IXF0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.89■□□□□ 0.94
NPAS3Q8IXF0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.89■□□□□ 0.94
NPAS3Q8IXF0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
NPAS3Q8IXF0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NPAS3Q8IXF0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 MMP23A-201ENST00000234610 1017 ntBASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 AC073195.1-201ENST00000607241 877 ntBASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NPAS3Q8IXF0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.87■□□□□ 0.93
NPAS3Q8IXF0 CLDN5-201ENST00000403084 2357 ntBASIC20.87■□□□□ 0.93
NPAS3Q8IXF0 Z98882.1-201ENST00000622160 2253 ntBASIC20.87■□□□□ 0.93
NPAS3Q8IXF0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPAS3Q8IXF0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.87■□□□□ 0.93
NPAS3Q8IXF0 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPAS3Q8IXF0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms